Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02212 ATGTGGAACCTTGCGTCTAGTCTTATTGCTGGAAGTGTGGGAATGAAAAAAGATGCTTCAAAACCAACTCAGTCTACTTCAGAATATTCTGATGATGAGACTTCTATGGTGAGCAGAGAAGAAAGGCTGGAATGTCCAATATGCTGGGAATCCTTTAACATTGTTGAAAATGTGCCTTATGTCTTATGGTGTGGCCACACCCTTTGTAAAAATTGCATCCTTGGATTGCAATGGGCCGTGGTGAAATTTCCAACACTGCCAATTCAGCTTCCACTTTTTATCTCTTGCCCATGGTGCAACCTTTTGTCTCTCCGTTTAATTTACCGGGGAAATCTGAAGTTCCCTCGTAAGAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAACGGTGATAGAGTGAAGTCACATTCTACTTTTTGTGGTGATCAACAACTAATCTGGCCAATTAAAGACAGTTTAACTTCAGGAAGCCAAGTAAGCCATGGCACTGTCAGCCTTCAGAGAGGACAAGTTTGTCATCCAGACTCTCCAAGTTCCAATCAACATCATGACAATACCAGTGATTACCATTATGGATTGGCTTGTCTGGGCATTATCCTTGTGGCCCCTTCATCTAGTGTCTTATACTTTGCAATTTGCCGACATCTCCATTTGCAAGCTGTATCATTTATCTTATCATCACGGTACACCTTTTGGCTGGTTGGAGGAAGGATATCAGATTTTTGCATCAAGTATTTGGATAGCAGCCAAGGCCGTGGAGTGAATAAGCTCTGCTACCAAAGTATAAAACGAAGGAATTTCCCCCCAGATCTTCTTCTGCATAGCCCAGATCCCATCCTATATGGCCAAGGAAAGTGTTTTTACACCACTGATCCCAGAAATAACTATGACAAAGCATCTATTGGCTCTTGCCATGATATTTGTAAATATGGGAGGAGGCAAGAAGCAAGAGAGGATCTCTCCGTCATTAAGAGAGCTGGAAGAAAATCACTTTGCCGAAGTTCTGAAGACATTTTTGGTGGGACGATGACATCAGTTCCTAAGCAAAGAGCGTCATTTGATTCCAAGCAAACAAAAAGGTCAACAGTGAGACACAGTAAATCAATTGATTCTGAGCTCCAGATTTCTGATACTTTTGACACAAATAAGCTGGTAGACAGTAAAAGAGCACCATTGGTCAGGGTCAGACCATCATTCCATCCAAAATCACATGTTTCTTCAATCCCAGAAACAAGGAGGGGGGAAATTTCTTCAAGTTTTAAGGTGGATGCTTCACCAAAACCATCTTCCAAAAAGGTGGAAACTTCACCAAAAGCAACTTCTGAGAGGGTGAAAACTCACACAAAATCAACTTCCCAAATGGTCAAAACTTCATCAGAATCTGTGTCCAAGATCAAGAGAGCTTCATCAAAGGTGTCTTCTTTTGAAGATAAAGGAATGGAGTTGTCTGATAAGCATGTGACTTCTTTGAGTCCAGATTTGAGAACAATGGAGACCATATCTTCTCTGAAATCTTCTGAGGGTATTGGTGGCCAAATGGATAGTAAGATCAAGATGAAAAAAAGAGAAGCCTCATCCAAACCTTCTCGCGGAATTATTTCAAGTGTTAGTGCAAGAAAGCACAAAGGCCTGAAAATTGTGCCTCGTCTTATGAATCAGCTCAAGGTTACAGAATTTGAACTTGAGGAACACAACAGTGAGACCCAGGAAAAGACTTTGTATGTCATCAAGATGGAAAGTGCAGAGCAAACTTCACACTATGATCAGAATGAAAGCCAGAATATTGAATTATCCCTTTCTAATTCGTTGTCACCACCCAAGTTTTCATCCTCCTCAATTTCTCAATCCTCATCCCAACAAGATCAAGTGGAATCTGAGCATGCAACTAAAGAATTTGAGGAGGATTCTTCTTCAGGAAACCAAGAAATTGAATACAAGGCTAATGTGGACACTTTGGAAGCTGAGGAGAATGGAAAGCCTCAAAATGGTGAGGTTGTTTGTTCTGAAGACAAGGACCGCCAAAAGCTAAAGGGAGAATTGGCTGAAACTCAAATTGAAAGAGGTGATCTGAAGAGCCTTAAATTCCAGAGTGGACAAGTGTTGGAGGACAATGCCACTGATGCTACTGGTCCAGAGAAGGTTGTTTTGCGACATCAAGATGTGCAAGTGCAGAAAGATAGACAAGGATTGTATAATTATGTGATTGAGGAAACAGCAAATAAACTGGTTGAAACTCAGAAGAGCAAGGTCAAAGCATTGGTTGGTGCCTTTGAAACTGTAATCTCTCTGGAAGAAAAAAGGACTTGTGCAATTGTCAATTGA 2322 0.4104 MWNLASSLIAGSVGMKKDASKPTQSTSEYSDDETSMVSREERLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSLRLIYRGNLKFPRKNYFLLWMVESMNGDRVKSHSTFCGDQQLIWPIKDSLTSGSQVSHGTVSLQRGQVCHPDSPSSNQHHDNTSDYHYGLACLGIILVAPSSSVLYFAICRHLHLQAVSFILSSRYTFWLVGGRISDFCIKYLDSSQGRGVNKLCYQSIKRRNFPPDLLLHSPDPILYGQGKCFYTTDPRNNYDKASIGSCHDICKYGRRQEAREDLSVIKRAGRKSLCRSSEDIFGGTMTSVPKQRASFDSKQTKRSTVRHSKSIDSELQISDTFDTNKLVDSKRAPLVRVRPSFHPKSHVSSIPETRRGEISSSFKVDASPKPSSKKVETSPKATSERVKTHTKSTSQMVKTSSESVSKIKRASSKVSSFEDKGMELSDKHVTSLSPDLRTMETISSLKSSEGIGGQMDSKIKMKKREASSKPSRGIISSVSARKHKGLKIVPRLMNQLKVTEFELEEHNSETQEKTLYVIKMESAEQTSHYDQNESQNIELSLSNSLSPPKFSSSSISQSSSQQDQVESEHATKEFEEDSSSGNQEIEYKANVDTLEAEENGKPQNGEVVCSEDKDRQKLKGELAETQIERGDLKSLKFQSGQVLEDNATDATGPEKVVLRHQDVQVQKDRQGLYNYVIEETANKLVETQKSKVKALVGAFETVISLEEKRTCAIVN 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02212 773 SUPERFAMILY RING/U-box 39 102 - -
Cca07g02212 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 137 IPR013083 -
Cca07g02212 773 MobiDBLite consensus disorder prediction 624 640 - -
Cca07g02212 773 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 296 674 - -
Cca07g02212 773 MobiDBLite consensus disorder prediction 599 671 - -
Cca07g02212 773 MobiDBLite consensus disorder prediction 395 464 - -
Cca07g02212 773 MobiDBLite consensus disorder prediction 16 35 - -
Cca07g02212 773 MobiDBLite consensus disorder prediction 346 367 - -
Cca07g02212 773 PANTHER EMB|CAB62594.1 296 674 - -
Cca07g02212 773 PANTHER EMB|CAB62594.1 675 772 - -
Cca07g02212 773 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Cca07g02212 773 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 675 772 - -
Cca07g02212 773 MobiDBLite consensus disorder prediction 599 623 - -
Cca07g02212 773 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Cca07g02212 773 MobiDBLite consensus disorder prediction 353 367 - -
Cca07g02212 773 MobiDBLite consensus disorder prediction 446 464 - -
Cca07g02212 773 MobiDBLite consensus disorder prediction 18 32 - -
Cca07g02212 773 Pfam Plant calmodulin-binding domain 669 762 IPR012417 GO:0005516
Cca07g02212 773 Pfam RING-type zinc-finger 45 78 IPR027370 -
Cca07g02212 773 SMART CaM_binding_2 654 762 IPR012417 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02212 Cca-Chr7 50352947 50365512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02212 1 135 Miscellaneous Gene Families AT3G29270 71.324 1.44e-68 225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02212 07 50352947 50365512 Cca07g02212 07 50352947 50365512 ECH
Cca07g02212 07 50352947 50365512 Cca09g00269 09 6386592 6390031 ECH
Cca09g00271 09 6441194 6453276 Cca07g02212 07 50352947 50365512 PCT