Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02209 ATGTCATTTCCTGCACAACGTATGCGAGCAGTGTATCGAAATCCTCTATGGCAGGTCAAGTCTGTGTTGGACATGAGACATAATGAACATTATAAGATCTATAATCTCTGTATAGAAGAAAATTATGATCCAGCTCTCTTCTATGGACGCGTGGAAGCATACCCCTTTGATGATAACCATGTTCCATCTCTTGAAATGATCAAAGATTTCTGTGAAAGTGTGGAGTCATGGCTGGCAAGTGACCCAAAAAACATTGCTGTTATCCATTGCATGGCAGGAAAAGGTAGAACTGGATTAATGGTATGTGCCTACCTAACTTATTGCGGCATGTCAGCAGAAGAGGCTCTTCAATTGTATGCAGATAGACGAACAACCAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTATGTGACATACTGGGAAAGTCTACTTTCTAATTCTGTCCCTAGGGGAACTGGAAATGGACCACGAGATGTGAACTTGCCTCAACCATGTAGCAGAGAATTGCGGCGAATCCGGCTATATGATACAGTCAACATAGACTCAATATTCTTTGTTATCTCAGAGCTACACGAGATTCCTAATGAGGTGTATCGTCCACCAGTGGAAGCTTACCGTGGCTACTGTAGACAGGTTAAGAAAGGATATCAGAGAAACAACAGCCCTCGCTATTATATTTCAATTCTTGAAGGTGATAACGATGGAATGCAATCAGAAACGGAAGAACCTCGCATTGTCGTTCAGATGGACACAGAGTCTCCTGCAATATACCAAAAATCATGTTTGGACCATTATTTTGATAAACCTATACAAGTAACTGGAGATGTACGTGTCATATTCTACGAGAAAATGATAGGAGGTCGCCTTTTCTACTGCTGTTTCAATACAGCTTTTATTAGGAACAGCTTACTACAGCTCACAATACAAGAGTTGGACAAAGTTGGTAACAAGGGAAAATCAATATGTGGCCCTGACTTCTGCCTAGAGTTGTTGTTTGGTCCTGCTAATGCAGGATATTCATCGTCAAGTATATCCAATGATGAACATTCTAGTGATGATTCCTTATAA 1074 0.4069 MSFPAQRMRAVYRNPLWQVKSVLDMRHNEHYKIYNLCIEENYDPALFYGRVEAYPFDDNHVPSLEMIKDFCESVESWLASDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSAEEALQLYADRRTTNNEGVSIPSQRRYVTYWESLLSNSVPRGTGNGPRDVNLPQPCSRELRRIRLYDTVNIDSIFFVISELHEIPNEVYRPPVEAYRGYCRQVKKGYQRNNSPRYYISILEGDNDGMQSETEEPRIVVQMDTESPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTIQELDKVGNKGKSICGPDFCLELLFGPANAGYSSSSISNDEHSSDDSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02209 357 Gene3D - 211 339 - -
Cca07g02209 357 SMART PTEN_C2_2 164 336 IPR014020 -
Cca07g02209 357 Pfam C2 domain of PTEN tumour-suppressor protein 226 334 IPR014020 -
Cca07g02209 357 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 349 - -
Cca07g02209 357 ProSitePatterns Tyrosine specific protein phosphatases active site. 88 98 IPR016130 GO:0016311|GO:0016791
Cca07g02209 357 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 68 123 IPR000387 GO:0016311|GO:0016791
Cca07g02209 357 ProSiteProfiles C2 tensin-type domain profile. 182 337 IPR014020 -
Cca07g02209 357 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 241 336 IPR035892 -
Cca07g02209 357 Pfam Tyrosine phosphatase family 78 120 IPR026893 GO:0004721
Cca07g02209 357 ProSiteProfiles Phosphatase tensin-type domain profile. 1 149 IPR029023 -
Cca07g02209 357 PANTHER BNAC03G16750D PROTEIN 1 349 - -
Cca07g02209 357 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 149 IPR029021 -
Cca07g02209 357 Gene3D Protein tyrosine phosphatase superfamily 1 153 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02209 Cca-Chr7 50293154 50297579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02209 1 341 Protein tyrosine phosphatase (PTP) family AT5G39400 71.137 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02209 K01110 - gmx:100809938 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02209 07 50293154 50297579 Cca07g02209 07 50293154 50297579 ECH