Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02200 ATGTCCCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATATGCATATGCAAGCTGATTACCACCAGCTGCCTGCAGTAACAGCTCCCACCGAACCACCTGTACAGCAGCAATCTTTTGCTCTAAATGAAGCTTCAGAGCAGCAAGTAGTTTCATCTGTATCAGAACCTAAAAATGCTCAACTGGAAACATCAGATCTCTCGCAGGCTGATAAGAAATTTCAACCATCTTCCCTGCCCATTGACAAACCTGCAGATGACGGCTACAACTGGCGTAAGTATGGACAGAAGCAAGTTAAGGGTAGCGAGTATCCACGAAGCTATTACAAGTGCACACATTTGAATTGCCCTGTGAAGAAAAAAGTTGAGCGTGCCCCCGATGGTCACATAACTGAAATCATCTATAAAGGCCAACATAACCATGAAAAGCCTCAGGCAAATAAGCGTGTCAAAGATAATAATGATTTGAATGGAAATGCAACTATTCAGCTTAAGTCTGAGTCAAACTCACAAGGATGGGTTGGACAAGTAAACAAGTTTAGTGAAAACATTCCTGATTGTTCAGTTCCTGAAAGTGACCAGACCTCCAATCAAGGAGCTCCTAGGCAACTACTACCTGGATCGAGTGAGAGTGAGGAAGTGGGTGATGTGGATAACAGGGAAGAGGCAGATGACAGTGAGCCAAACCCTAAGAGAAGGAACACTGATGTCACGGTTACTGAAGTACCCCTATCTCAGAAGACTGTTACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGGTACAGGTGGCGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCTAGGAGTTATTACAAATGCACAAGTGCCGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCAACGGACCCCAAAGCCGTCATAACCACGTATGAGGGTAAGCACAATCATGATGTGCCGGCTGCTAGAAACAGCAGCCACAACACAGCTAGTAGCAATCCAATGCCGTTAAAACCGCATAATGCAGCGCCGGAGAAGCATCCTTTGCTTAAAGATATGGAGTTTGGAAGCAATGACCAAAGACCTGTACATTTGCGCTTAAAAGAAGAACAAATCATAGTATAG 1158 0.4456 MSHQQALAQVTAQAVLAQSHMHMQADYHQLPAVTAPTEPPVQQQSFALNEASEQQVVSSVSEPKNAQLETSDLSQADKKFQPSSLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQANKRVKDNNDLNGNATIQLKSESNSQGWVGQVNKFSENIPDCSVPESDQTSNQGAPRQLLPGSSESEEVGDVDNREEADDSEPNPKRRNTDVTVTEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTASSNPMPLKPHNAAPEKHPLLKDMEFGSNDQRPVHLRLKEEQIIV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02200 385 MobiDBLite consensus disorder prediction 188 211 - -
Cca07g02200 385 MobiDBLite consensus disorder prediction 327 354 - -
Cca07g02200 385 Gene3D WRKY domain 79 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 Gene3D WRKY domain 256 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 ProSiteProfiles WRKY domain profile. 92 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 MobiDBLite consensus disorder prediction 54 96 - -
Cca07g02200 385 SUPERFAMILY WRKY DNA-binding domain 90 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 MobiDBLite consensus disorder prediction 54 81 - -
Cca07g02200 385 SUPERFAMILY WRKY DNA-binding domain 263 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 ProSiteProfiles WRKY domain profile. 266 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 MobiDBLite consensus disorder prediction 141 163 - -
Cca07g02200 385 MobiDBLite consensus disorder prediction 141 156 - -
Cca07g02200 385 SMART WRKY_cls 91 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 SMART WRKY_cls 271 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 MobiDBLite consensus disorder prediction 188 251 - -
Cca07g02200 385 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 384 IPR044810 GO:0003700
Cca07g02200 385 MobiDBLite consensus disorder prediction 333 347 - -
Cca07g02200 385 PANTHER WRKY PROTEIN 1 384 - -
Cca07g02200 385 Pfam WRKY DNA -binding domain 272 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g02200 385 Pfam WRKY DNA -binding domain 92 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02200 Cca-Chr7 50208945 50213763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02200 1 383 WRKY Transcription Factor Family AT2G03340 53.590 4.17e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca07g02200 WRKY 6.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02200 - - gmx:100796679 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02200 07 50208945 50213763 Cca07g02200 07 50208945 50213763 ECH