Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02199 ATGGGCTGCGTGAGCTCCAAGAAAGCGTTCGCCGGAGCCGGTTTGTCGCCGGAGGCGAGGCCGTACGCGGCGCGGTCGAAACGGAGCAATGGGGCGGGGCGAAACGGCGTCGTGGCGGAGAGGCGAGAGGGAGCCGATGAGGGGAAGGAGTGGAAGAAGGGAAGCTTGAGAGGGGGAAACGGTTCGGTGTCTTTGAGGCTGTCGTATAGGTTTGTGGAGGCTGAGCAGAATGCTGCTGGGTGGCCACCTTGGCTTACCTCTGTTGCTGGGGAAGCCATTCAAGGGTGGCTCCCTCTCCAAACAGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTCCAAGCACGAGAAATTGAAACTGGCAGAATGGTTGCCCTGAAGAAGGTGCGCTTTGACAAATTTCAGGCTGAGAGCGTTAGGTTCATGGCAAGAGAAATACTAATTCTCCGCACACTTGACCACCCAAACGTCATGAAATTAGAGGGTATAATTGCTTCACAACAATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTATTAGCTTCACCTGACATAAAGTTCACTGACTCACAGATTAAGTGTTACATGAGACAGCTATTAAGTGGAATAGAGCATTGTCACCTTCAAGGTATTATGCATCGAGACATTAAAGCATCTAATATATTAGTGAACAATGAAGGTATTCTCAAGATAGCAGATTTTGGATTAGCAAATACCCTTAGCCCAAATAGTAAGCAACCCTTAACAAGTCGTGTAGTGACTCTATGGTATCGTCCTCCCGAGCTCTTGATGGGATCAACAAACTATGGAGTATCTGTGGATCTATGGAGTGTGGGCTGTGTATTTGCCGAACTGTTCCTTGGGAAGCCCATCCTTAAGGGGAGAAATGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGGTCTCCACCTGATGAGTTTTGGAAAAAGAGTAAGCTTCCTTTGGCCACAATGTTTAAGCCTCAGACAAAATATGAAAGCTCTCTTTGGGAGAGGTGCAGAGGTTTTCCTGTAACTGCTGTAAACCTACTTGAGACTTTACTTTCCATTGATCCTGCCAAGCGTGGGACTGCCTCCTCTGCCCTCATGTCTGAGTATTTCAGCACCGTGCCATATGCTTGTAATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATTCCAAAAATCGGGTAGAAGTGCAAAGGAAAAATAATGGAGGTAAAGTTAGAGAGGCTGTAACATCAAAAAGGCAAAGACGAATCCAGAAAGTCTCCCATGACAATATCATTTTCAACAAGCCAGCTTTGAAAGAGGAAATGCAGAATATTTCTGAAAATGCTTGTACAGATGATGGTAAGGAAAGTGTTACAAAAGGAAAAGTAGGATATATGCACAAAGAGCAACCAAAGCCTTCACATGATTCAAAGTCAGAGACTGCCCAAGTGGTGAATAATGGTTGCAATGGTTACAGTGTGTACTCAGGACCAGCACCAGTCTCAGGATCTAGTGGCTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCAGATAGCTCAAGAAGCAAAATCAGTGTTCTGGATCCAACCTTTGCAAAAGACACATATGATTTAACAGAACATGGGATAGAGGTTTCAGAAAGGAAACATAGTTACAACACAAGCCATGATGATGAGACTTCCAACTATGTATTACAAAAACACGTGGCTCCCCACATTCAACAAAAATCATTCGATGTAGCTGATACATACAACTCAGATTTTTACATGGAATTTGATTTCTCAGTTAAAATGGATGCTTTGATAGATACTCAGGGCTACAGAAAACATGGTGAGGAGCAACCAGTACCGAAAATGATCCCATCAAATGAAAATGATGAGTTGCATTGGAATGAAAACTGTATGCGGCAATCTCTTCGTAAATCAAGGTTGGGAAGAGACTAG 2004 0.4386 MGCVSSKKAFAGAGLSPEARPYAARSKRSNGAGRNGVVAERREGADEGKEWKKGSLRGGNGSVSLRLSYRFVEAEQNAAGWPPWLTSVAGEAIQGWLPLQTDSFERLDKIGQGTYSSVFQAREIETGRMVALKKVRFDKFQAESVRFMAREILILRTLDHPNVMKLEGIIASQQSNSIYLVFEYMEHDLAGLLASPDIKFTDSQIKCYMRQLLSGIEHCHLQGIMHRDIKASNILVNNEGILKIADFGLANTLSPNSKQPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRNEVEQLHKIFKLCGSPPDEFWKKSKLPLATMFKPQTKYESSLWERCRGFPVTAVNLLETLLSIDPAKRGTASSALMSEYFSTVPYACNPSLLPKYPPSKEMDSKNRVEVQRKNNGGKVREAVTSKRQRRIQKVSHDNIIFNKPALKEEMQNISENACTDDGKESVTKGKVGYMHKEQPKPSHDSKSETAQVVNNGCNGYSVYSGPAPVSGSSGFTWAKRRKPEASSILSDSSRSKISVLDPTFAKDTYDLTEHGIEVSERKHSYNTSHDDETSNYVLQKHVAPHIQQKSFDVADTYNSDFYMEFDFSVKMDALIDTQGYRKHGEEQPVPKMIPSNENDELHWNENCMRQSLRKSRLGRD 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02199 667 CDD STKc_CDK9_like 104 388 - -
Cca07g02199 667 PANTHER CELL DIVISION PROTEIN KINASE 39 562 - -
Cca07g02199 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Cca07g02199 667 MobiDBLite consensus disorder prediction 39 53 - -
Cca07g02199 667 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02199 667 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Cca07g02199 667 MobiDBLite consensus disorder prediction 1 53 - -
Cca07g02199 667 Gene3D Transferase(Phosphotransferase) domain 1 187 428 - -
Cca07g02199 667 PANTHER CYCLIN-DEPENDENT KINASE 39 562 - -
Cca07g02199 667 SUPERFAMILY Protein kinase-like (PK-like) 98 394 IPR011009 -
Cca07g02199 667 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Cca07g02199 667 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02199 667 MobiDBLite consensus disorder prediction 629 648 - -
Cca07g02199 667 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02199 Cca-Chr7 50199574 50205661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02199 96 430 Core Cell Cycle Gene Families AT5G10270 47.714 5.67e-109 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca07g02199 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02199 - - gmx:100781059 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02199 07 50199574 50205661 Cca07g02199 07 50199574 50205661 ECH
Cca07g02199 07 50199574 50205661 Cca09g00260 09 6254400 6260195 ECH