Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02198 ATGGCAAAACTTGCCCCTCTTGAGGAGGCCCTTTTGAATGGTGAGTCTTGTGTAAGCAACAGTTCTGATCCCTGTAAGACCAAAGGAAATAAAAGTTTAACCTGCTATTCAAATGCTGGATTTTTCAGCATTCTTTCTTTCTCATGGATCAGTCCACTAATACATCTTGGCAATGTGAAGACTTTAGATCATGAGGACCTCCCAATGCTTGCCGCTGATGACAGTGCCTACGGGGCTTTTACAACTTTTAGAAACAAGCTTGAGTCAGAGTGTGGTAGTGCTAGGAGAGTAACCACTCTTAAGCTGGTGAAAGTTTTAATCTTCTCAACATGGCAAAGGACCCTTTTATCCGGTTTGTTAGCATTCTTATGCACTTGTGCTTCTTATGTTGGACCCTATCTTATTAAAATCCTTGTTCAATACTTCAACAAGGAACACAAGTTTAAAAATGAAGGCTACATGTTGGCTATGGCATTTGTTGCAGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTGGATATTTAACTTGCAGCAGGTTGGGGTAAGGATGCAATCAATGTTGGTGACAATGATCTATGCTAAAGGTTTGACCCTTTCATGCCAATCAAAAGAAGGTTACAGCAGTGGGGAAATCATCAACTTAATAACTGTGGATGCAGAGAGGGTTGGTGACCTTTGTTGGTACATGCATGCTCCATGGATATGTATTCTGCAAGTTGCTTTGGCAATGTTAATTCTCTACAGAAGTGTTGGGGTCGCTTCGATAGCTGCTTTTGCTGCCACTGTAATTGTGATGCTGCTAAATCTTCCTTTGGCATCATTGCAAGAACAGTTCCAAGGTAAGATAATGGAGTTCAAAGATAAAAGAATGAAGGCGACGTCTGAGATTCTAAAGAATATGAAGATTCTAAAACTTCAAGCATGGGAAATGAAGTTCTTATCAAAGATTTTTCAGCTTAGGAAGACTGAGGAGACATGGCTAAAGAAATTTCTAGTTAGCACAGCTATTACTAGATTTCTCTTGTTTAATGCTCCAACTTTTATTGCTGTGGTCACCTTCAGTTCTTGTGTTCTTATAGGCATCCCACTTGAATCAGGGAAAATATTATCTGCACTTGCAACATTCGAAATTCTTGAAATGCCCATCTACACTCTTCCTGACACAATTTCAATGATTATACAAACTAAGGTTTCTCTTGATAGGATCTCATCATTTCTTTGTCTAGATGAATTGCAGACTGATGTAGTGGAGAAACTTCCCAGGGGTAGTTTTAATATAGCAATTGAACTAGTTGATGGAAATTTCTCTTGGGAGTTATCTTCCCTTAACACAACATTGAAAAACATAAATCTCAGAGTTTTTCATGGTACGAGGGTTGCTGTTTGTGGTACAGTTGGATCAGGCAAATCTAGTTTACTTTCATGTATAATGGGTGAAATACCTAAGGTATCTGGGACGCTGAAGGTGTGTGGATCAAAGGCTTATGTTTCTCAGTCACCATGGATACAAAGTGGCACGATCGAAAATAACATATTATTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTAGAGGTTCTACCATTTGGTGATCAAACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCCCGTGCTCTTTACCAAGATTCTGACATTTATTTGTTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTCTTTAGGGAGTGTTTGCTTGGCCTTCTGAAAACAAAAACCGTGATATACATAACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAAGGATAACTCAGTCAGGAAAATACAATGACATTCTCCAATCAGACACTGATTTTATGGAACTTGTAGGTGCAAATACAGAAGCTTTGTCTTCAGTAATGTCCTCAGAAAGAATGCTCACATTTAAAACATTGAGTGTCGCCACAAAGGACACAGATTCACTAAGTGATTTTGAACTTGAGCAAACACAGAAAAATGAAGATGATCATCATACCAAGTCAGATGACACAGTTGAGCCAAAAGGTCAACTTGTTCAAGATGAAGAACGGGAAAATGGTAGAGTTGGGTTCAAGGTCTATTGGAAATACATCACAACAGCTTATGGAGGAGCTTTTGTACCCTTTATATTACTCTCACAGATACTCACCATGATTTTTCAGATTGGAAGCAACTATTGGATGACTTTAGAAACTCCTGTTTCTGCAACTGCAGAAACTGATATTGAAAGCTTTACACTTATGGTTATCTATGTTGCTTTGGCAATTGGAAGTTCCTTTTTCATCCTTGTCATATCAGTTCTTAAATTGATAGCTGGATACAAAACAGCTACAGTGCTCTTCAATAAAATGCATTTGTGCTTTTTTCGAGCACCAATGTCATTTTTTGATGCCACGCCAAGTGGGAGAATCATTAATAGAGCTTCAGCAGATCAAAACACAATAGACATAAGCATTTCGGATTTGGTATGGGAAATTACCTTCAGTCTGATTCACCTCTTAGGCAATATCGCTGTGATGTCTCAAGCTGCATGGCAGGTGTTTATAGTATTGATTCCTATCATGGCAGCTTGTATATGGTACCAGCAATACTATTCTGCATCTGCACGGGAATTGGCACGATTAGTTGGAATATGCCAGGCTCCAGTTATACAACATTTTTCCGAAACAATTTCTGGATCAACAACCATAAGATGCTTTGAGCAACAATCGAGATTTAATGACATACATATGAAACTGATAGATAGATATTCCCAACCCAGATTGAACAGTGCTAGTGCAATGGAATGGCTGAGTTTCAGATTGGATATTTTATCCACTATCACATTTGCCTTTTGTTTAGTTTTCTTGATATCTTTTCCAAATTCAATTACTGCCCCTGGCATTGCGGGATTGGCTGTGACATATGGGCTTAGTCTTAATGAACTACAATTTAGTTTAATCTGGTGTCTTTGCAATTTGGAGAATGAAATTATATCCGTAGAAAGAGTACTTCAGTACACCTCCATCCCAAGTGAAGCTCCTCTTGTAATAAAAGAGAACCAACCAGATCATTCTTGGCCATCATTTGGAGAGGTTCATATCCAAGATTTACAGGTTCGATATGCTCCTCATTTGCCTCTTGTTTTACATGGTCTTACTTGCACTTTCACTGCTGGAGCAAAAACTGGCATTGCAGGAAGAACAGGAAGTGGAAAATCAACTCTAGTCCTAACTCTTTTTCGACTTCTTGAACCTGTTGCTGGACAAATATTGATAGATGGTGTTAACATCTCTTTGATTGGAATTCATGATTTGAGGTCCAGATTGAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACCATCCGAAGCAACTTGGACCCCTTGGAAGAATACACAGATGAACAGATTTGGAAGGTTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGGGAAGCTTGACTCCGTAGTCACTGAGAATGGAGAAAATTGGAGCATGGGACAAAGGCAATTGGTCTGCCTTGGCCGTGTTCTACTTAAGAAAAGCAAGATATTGGTCCTTGATGAAGCTACTGCCTCGGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTGAGTCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTGGATAGTGACACAGTTCTGTTTCTAAATCAAGGGCTTGTTGAGGAATATGATTCACCAAAGAAACTGCTTATGGACAAATCTTCATCTCTAGCTCAACTAGTTGCAGAGTACACAAGAAGGTCAAACTCTGGTTTTGGAAGTTAA 3918 0.392 MAKLAPLEEALLNGESCVSNSSDPCKTKGNKSLTCYSNAGFFSILSFSWISPLIHLGNVKTLDHEDLPMLAADDSAYGAFTTFRNKLESECGSARRVTTLKLVKVLIFSTWQRTLLSGLLAFLCTCASYVGPYLIKILVQYFNKEHKFKNEGYMLAMAFVAAKLVECLSQRHWIFNLQQVGVRMQSMLVTMIYAKGLTLSCQSKEGYSSGEIINLITVDAERVGDLCWYMHAPWICILQVALAMLILYRSVGVASIAAFAATVIVMLLNLPLASLQEQFQGKIMEFKDKRMKATSEILKNMKILKLQAWEMKFLSKIFQLRKTEETWLKKFLVSTAITRFLLFNAPTFIAVVTFSSCVLIGIPLESGKILSALATFEILEMPIYTLPDTISMIIQTKVSLDRISSFLCLDELQTDVVEKLPRGSFNIAIELVDGNFSWELSSLNTTLKNINLRVFHGTRVAVCGTVGSGKSSLLSCIMGEIPKVSGTLKVCGSKAYVSQSPWIQSGTIENNILFGKEMDREKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDSDIYLFDDPFSAVDAHTGSHLFRECLLGLLKTKTVIYITHQVEFLPDADLILVMREGRITQSGKYNDILQSDTDFMELVGANTEALSSVMSSERMLTFKTLSVATKDTDSLSDFELEQTQKNEDDHHTKSDDTVEPKGQLVQDEERENGRVGFKVYWKYITTAYGGAFVPFILLSQILTMIFQIGSNYWMTLETPVSATAETDIESFTLMVIYVALAIGSSFFILVISVLKLIAGYKTATVLFNKMHLCFFRAPMSFFDATPSGRIINRASADQNTIDISISDLVWEITFSLIHLLGNIAVMSQAAWQVFIVLIPIMAACIWYQQYYSASARELARLVGICQAPVIQHFSETISGSTTIRCFEQQSRFNDIHMKLIDRYSQPRLNSASAMEWLSFRLDILSTITFAFCLVFLISFPNSITAPGIAGLAVTYGLSLNELQFSLIWCLCNLENEIISVERVLQYTSIPSEAPLVIKENQPDHSWPSFGEVHIQDLQVRYAPHLPLVLHGLTCTFTAGAKTGIAGRTGSGKSTLVLTLFRLLEPVAGQILIDGVNISLIGIHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDEQIWKVLDMCQLGDEVRKKEGKLDSVVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVSQHFSECTVITIAHRITSILDSDTVLFLNQGLVEEYDSPKKLLMDKSSSLAQLVAEYTRRSNSGFGS 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02198 1305 CDD ABCC_MRP_domain1 429 629 - -
Cca07g02198 1305 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Cca07g02198 1305 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1304 - -
Cca07g02198 1305 MobiDBLite consensus disorder prediction 689 716 - -
Cca07g02198 1305 CDD ABC_6TM_ABCC_D2 740 1034 IPR044726 GO:0140359
Cca07g02198 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1059 1293 IPR003439 GO:0005524
Cca07g02198 1305 Gene3D - 412 672 IPR027417 -
Cca07g02198 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 651 IPR027417 -
Cca07g02198 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 738 1022 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g02198 1305 SUPERFAMILY ABC transporter transmembrane region 741 1041 IPR036640 GO:0005524|GO:0016021
Cca07g02198 1305 Gene3D ABC transporter type 1, transmembrane domain 704 1040 IPR036640 GO:0005524|GO:0016021
Cca07g02198 1305 Gene3D ABC transporter type 1, transmembrane domain 84 411 IPR036640 GO:0005524|GO:0016021
Cca07g02198 1305 SMART AAA_5 456 629 IPR003593 -
Cca07g02198 1305 SMART AAA_5 1085 1270 IPR003593 -
Cca07g02198 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g02198 1305 Pfam ABC transporter 1076 1224 IPR003439 GO:0005524
Cca07g02198 1305 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Cca07g02198 1305 Pfam ABC transporter transmembrane region 115 379 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g02198 1305 Pfam ABC transporter transmembrane region 742 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g02198 1305 SUPERFAMILY ABC transporter transmembrane region 107 403 IPR036640 GO:0005524|GO:0016021
Cca07g02198 1305 Gene3D - 1042 1295 IPR027417 -
Cca07g02198 1305 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1304 - -
Cca07g02198 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Cca07g02198 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1050 1283 IPR027417 -
Cca07g02198 1305 CDD ABCC_MRP_domain2 1057 1277 - -
Cca07g02198 1305 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02198 Cca-Chr7 50186869 50196644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02198 429 665 Calmodulin-binding Proteins AT2G36910 29.249 6.85e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02198 - K05666 gmx:100795627 2279.98