Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02196 ATGGATGGACCAGCTGGCCGAGGTAGTGGTGCTGGCCTTGACATGTTTCTACCAAATTATAAATTGGGAAAAACACTTGGGATTGGTTCTTTTGGCAAGGTGAAAATTGCAGAACATGTATTGACTGGCCATAAGGTTGCGATTAAGATCCTTAACCGACGTAAGATAAAGAACATGGAAATGGAAGAAAAAGGACAAAAATTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCCTCACATTATAAGACTTTATGAAGTCATAGAAACTCCAACTGACATATATGTTGTTATGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAGAAGGGTAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAGCAGCAGATAATCTCTGGCGTGGAGTACTGTCATAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGGCATTTTTTGAAGACAAGTTGTGGAAGCCCAAATTATGCAGCTCCTGAGGTTATCTCTGGAAAATTGTATGCTGGACCTGAAGTGGATGTCTGGAGCTGTGGTGTAATTTTGTATGCTCTTCTTTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCAAACCTCTTCAAGAAAATTAAGGGTGGGATATACACTCTTCCCAGTCATCTATCAGCTAGTGCTAGAGATTTGATACCTGGGATGCTCGTAGTTGACCCTATGAGGAGAATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCCCGTCTTCCCCGTTATTTAGCTGTGCCACCACCAGATACATTGCAACAGGCCAAAAAGATTGATGAGGAGATCCTCCAGGAAGTGGTGAATATGGGATTTGACAGGAATCAATTGGTCGAGTCTCTTCGGAACAGGATGCAATATGAGGGTACTGTGGCATACTATTTGTTATTGGACAACCGCTTTCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGTCCATGGATTCTGGTTTTAACCAAATGCTTCCCAGTGAAGTTGCTTCTTCAGTTGTTGGACACCGCTTTCCAGGTTATATGGATTATCCAGGAGTAGGATCGAGACGACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATAGGTCACTACAACATGAAGTGCAGGTGGGTTGCTGGGATTCCTGGTCATCACGAAGGAATGGTTAACAATAATGTGCATAGTAATCATTACTCTGAAGATGATTCCAACATTATTGAGAACGATGCTGTTTCTACATCAAATGTGGTCAAATTTGAAGTGCAGCTTTACAAAACTCGGGAAGAAAAGTACCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTGTGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTAG 1560 0.4212 MDGPAGRGSGAGLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKGQKLRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSASARDLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTLQQAKKIDEEILQEVVNMGFDRNQLVESLRNRMQYEGTVAYYLLLDNRFRVSSGYLGAEFQESMDSGFNQMLPSEVASSVVGHRFPGYMDYPGVGSRRQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGIPGHHEGMVNNNVHSNHYSEDDSNIIENDAVSTSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02196 519 ProSiteProfiles Protein kinase domain profile. 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02196 519 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 297 337 IPR015940 -
Cca07g02196 519 CDD AMPKA_C 394 516 - -
Cca07g02196 519 SUPERFAMILY Protein kinase-like (PK-like) 17 291 IPR011009 -
Cca07g02196 519 SMART serkin_6 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02196 519 SMART uba_6 299 336 IPR015940 -
Cca07g02196 519 Pfam UBA/TS-N domain 298 323 IPR015940 -
Cca07g02196 519 Pfam Protein kinase domain 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02196 519 SUPERFAMILY KA1-like 333 518 IPR028375 -
Cca07g02196 519 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 518 - -
Cca07g02196 519 CDD UBA_SnRK1_plant 298 338 - -
Cca07g02196 519 Gene3D Transferase(Phosphotransferase) domain 1 12 353 - -
Cca07g02196 519 Gene3D Kinase associated domain 1, KA1 400 517 - -
Cca07g02196 519 Pfam Kinase associated domain 1 476 518 IPR001772 -
Cca07g02196 519 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Cca07g02196 519 Coils Coil 51 71 - -
Cca07g02196 519 CDD STKc_AMPK_alpha 17 276 - -
Cca07g02196 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Cca07g02196 519 PANTHER SERINE/THREONINE KINASE 9 518 - -
Cca07g02196 519 SUPERFAMILY UBA-like 286 325 IPR009060 GO:0005515
Cca07g02196 519 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 470 518 IPR001772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02196 Cca-Chr7 50158761 50164453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02196 20 276 CBL-interacting serine-threonine protein kinases AT4G24400 51.163 1.47e-87 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Cca07g02196 Pkinase 5.7e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02196 K07198 - gmx:100796687 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02196 07 50158761 50164453 Cca07g02196 07 50158761 50164453 ECH