Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02195 ATGGCAAGGAAGAGAAAAGTTGCTGAAGCAGTTGAAGAGAGGAATCCATGTGAGAAAACCATGACATGGGATGAGATGATGAAGGAAACTGCTACACTAGGAAGTGTAAGGAGATTGAGGAAGAGATTTGTTGGTGTGAGACAAAGGCCATCAGGAAGATGGGTGGCTGAGATAAAAGACACCATTCAGAAGATAAGGGTGTGGTTAGGCACATTTGATACAGCAGAAGAAGCTGCAAGAGCCTATGATGAAGCTGCATGCCTTCTTAGAGGTGCCAACACTAGAACAAACTTCTGGCCTAATTCTCAATCCTCATCAACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTTAAAGCAAGGAATAACAATAACAACCTTTGCTCTCTTTCTTCTTCTTCCTCCTTCACTTCTCCAATTATCAACTACCAGCATATGCAGCAAGCAGATGCATGTGGAACTGAGTCAAGTTACCTCCTAATGGACCAATTCACTGATTTGCTTAATGACCCTGAAGATTATAGCACAAGCAACAATGAGTTTAGTAATGATAGTGCACAAGCACAAATTGATCACATCACAAGCAATCTTGAATCATGTTTGAATGAAAAAGAGAATTGCAGGATAAAGGAAATGGAATTTGATTTCAGCAGTGTGACACAAACATCAAGTGATGATGTAAATTCAGGAGGGGAAAGAGAGGAAGACAGTGAAGAAGGCAGTGATTTGAGTGCTGAGGATTTTCAGTTCTTGGACAATGTTGTTCCGTCAAGTTACTATTATTCACCTTTTGACATTGCTGAAGAGATTGAGGAGCAATTGGAGCCTGAGAACTGTGGTGATGAGCCCTCAATGCTGAGAGCAGCCATGGAGTGGATGAAATATGAGAGAAGTTTTCAGCATCCCTTTATGCCTTCAATGGAATACCTGAGTGCTTGA 951 0.4164 MARKRKVAEAVEERNPCEKTMTWDEMMKETATLGSVRRLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPNSQSSSTPALPSKITNLLLQRLKARNNNNNLCSLSSSSSFTSPIINYQHMQQADACGTESSYLLMDQFTDLLNDPEDYSTSNNEFSNDSAQAQIDHITSNLESCLNEKENCRIKEMEFDFSSVTQTSSDDVNSGGEREEDSEEGSDLSAEDFQFLDNVVPSSYYYSPFDIAEEIEEQLEPENCGDEPSMLRAAMEWMKYERSFQHPFMPSMEYLSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02195 316 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Cca07g02195 316 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Cca07g02195 316 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Cca07g02195 316 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Cca07g02195 316 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 303 - -
Cca07g02195 316 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Cca07g02195 316 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Cca07g02195 316 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Cca07g02195 316 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 303 - -
Cca07g02195 316 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Cca07g02195 316 Coils Coil 187 207 - -
Cca07g02195 316 MobiDBLite consensus disorder prediction 222 250 - -
Cca07g02195 316 MobiDBLite consensus disorder prediction 235 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02195 Cca-Chr7 50152714 50153664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02195 40 118 AP2-EREBP Transcription Factor Family AT5G19790 71.951 1.13e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g02195 AP2 5.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02195 K09286 - gmx:100796159 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02195 07 50152714 50153664 Cca07g02195 07 50152714 50153664 ECH