Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02193 ATGGACCTTGAGGCAAGAAGTTTACAGCCGGACCTTAAGACTCTGCTTCTTGCTAAGGTGCGGGAGTACAAAGCAGATCTGAACATCATTAAAAGAGAAGTGAAGAAAATTGTATCTGGTGACTTAAACCCTTCTGTACGGGATGAGTTGTTGGAATCCAACACGACAAATGTTATGATGGCATCAGCTGATCATAGAGAAAGATTAATGGTATCAACTGAAAGGTTGAACAAGTCTGGTGACAGAATTAAGGACAGTAGAAGAACAATGCTGGAAACAGAAGAGTTTGGCGTTTCGATTCTTCAAGATTTGCATTCACAGAGACAATCTCTACTGCATACACATGATTCGCTTCATGGAGTGGACAATAACATCAGCAGGAGCAAGAAAATTTTGTCTAACATGTCAATAAGGATGAACAGGAACAAGTGCATCTTGAGCACCATTGGTGTGGTCCTGATTGTTGTTATCATCTTGATTCTATACTTCAAACTTTCATAA 501 0.3972 MDLEARSLQPDLKTLLLAKVREYKADLNIIKREVKKIVSGDLNPSVRDELLESNTTNVMMASADHRERLMVSTERLNKSGDRIKDSRRTMLETEEFGVSILQDLHSQRQSLLHTHDSLHGVDNNISRSKKILSNMSIRMNRNKCILSTIGVVLIVVIILILYFKLS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02193 166 Gene3D - 1 43 IPR038407 -
Cca07g02193 166 SUPERFAMILY SNARE fusion complex 76 135 - -
Cca07g02193 166 CDD SNARE_Vti1 73 134 - -
Cca07g02193 166 SUPERFAMILY t-snare proteins 1 39 IPR010989 GO:0016020|GO:0016192
Cca07g02193 166 Gene3D - 63 143 - -
Cca07g02193 166 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 166 - -
Cca07g02193 166 Pfam Snare region anchored in the vesicle membrane C-terminus 74 139 - -
Cca07g02193 166 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 1 166 - -
Cca07g02193 166 Pfam Vesicle transport v-SNARE protein N-terminus 1 36 IPR007705 GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02193 Cca-Chr7 50121504 50124750 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02193 K08493 - gmx:100816145 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02193 07 50121504 50124750 Cca07g02193 07 50121504 50124750 ECH
Cca07g02193 07 50121504 50124750 Cca09g00256 09 6171065 6178683 ECH