Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02192 ATGGCAGTTTGCATATTAACGGTGGCACAGGACGGAACCGCCGATTTCCGAACGGTGCAGGAGGCAATCGACGCCGTGCCGCTCGGCAACACTTGCCGGACGGTCATTCGTATCTCGCCGGGAATCTACCGCCAACCCGTCTACGTCCCCAAGACCAAGAATTTCATCACTTTCGCCGCTCTCAGTCCCGAGGACACTGTGCTCACATGGAACAACACTTCATCCGGAATTGATCACCACCAACCTGCGAGGCTGATTGGGACCGGGACGTTTGGTTGTGGAAGTATCATTGTGGAAGGGGAGGACTTTATTGCTGAGAACATTACTTTTGAGAATTCTTCTCCTCAGGGTTCAGGGCAAGCAGTTGCAATTAGAGTAACGGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTGCATTATGGTAAACAATATTTGAAAGATTGCTACATTGAAGGAAGTGTGGACTTCATCTTTGGTAATAGCACTGCCCTTTTGGAGCACTGTCACATCCACTGCAAGTCTGAAGGCTTCATAACCGCACAGGGCAGAAAATCATCTAAGGAAACAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGAAATTCATATGCATGCCTTGGACGACCATGGGGACCTTTTGGAAGGGTGGTCTTTGCATACACGTACATGGATCAATGTATAAGGCATGATGGCTGGGATAACTGGGGGAATGTGGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCGAGACGAGTAACATGGTGTAGAGAATTGTTGGATGAAGAAGCTATGCAGTTCCTCTCGCATCCTTTCATTGATCCAGAACCAGAGAAACCTTGGCTGGCTCAAAGGATGGCCCTCAGGATTCCATATTCTGCTTGA 951 0.4795 MAVCILTVAQDGTADFRTVQEAIDAVPLGNTCRTVIRISPGIYRQPVYVPKTKNFITFAALSPEDTVLTWNNTSSGIDHHQPARLIGTGTFGCGSIIVEGEDFIAENITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQGRKSSKETTGYVFLRCVITGNGGNSYACLGRPWGPFGRVVFAYTYMDQCIRHDGWDNWGNVENERSACFYEYRCFGPGCCPSRRVTWCRELLDEEAMQFLSHPFIDPEPEKPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02192 316 Gene3D - 5 310 IPR012334 -
Cca07g02192 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Cca07g02192 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Cca07g02192 316 PANTHER PECTINESTERASE 1 315 - -
Cca07g02192 316 SUPERFAMILY Pectin lyase-like 5 298 IPR011050 -
Cca07g02192 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02192 Cca-Chr7 50117671 50121237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02192 5 309 Carbohydrate Esterase AT5G47500 39.048 9.60e-72 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02192 K01051 - gmx:100786786 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02192 07 50117671 50121237 Cca07g02192 07 50117671 50121237 ECH