Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02187 ATGGAAGCATTATCAGGAGTGAGGAAAGGTGCATGGAGTAAATGTGAAGATGACCTTCTCAAAGCTTGCGTGCAGCGTTATGGAGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGCAAGAGTTGTAGAATGAGATGGTTGAACTATCTAAAACCAAATATCAAGCGAGGAGATTTCAGTGAAGATGAGATTGATATGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCCCTAATTGCAGGAAGGCTTCCGGGAAGAACTTCAAACGATGTTAAAAATTATTGGAACACCTACATGCGACGTAAAGTGCAATCTCACAACAACGACAACAACGTAAAGCAACAAGAGGTCGAATCAACAGTGAAACCCCACGAAGTCATAAAGCCTGTACCTCGATCTTTGTCAAAAACATCCTCTTTGTTGCAAGGGAAATTCATTAGTAGTTCCAAAGTTGGTGTTCGTGAAACAAGTGCAGGTTCATTATTAGGATCTGAGAATTGGTGGGAAACTTTGTTAGATGACAAGGAAGATAATGCATGTAACAACAAGTGCTTCTTTGATGGGGGAGATGGATCACTTGATCTTTGGGATATCTTATTTCCATTGATTGTGACTTTCTTGCACAAGGTGAAACTTTGA 663 0.4057 MEALSGVRKGAWSKCEDDLLKACVQRYGEGKWHLVPQRAGLNRCSKSCRMRWLNYLKPNIKRGDFSEDEIDMMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYMRRKVQSHNNDNNVKQQEVESTVKPHEVIKPVPRSLSKTSSLLQGKFISSSKVGVRETSAGSLLGSENWWETLLDDKEDNACNNKCFFDGGDGSLDLWDILFPLIVTFLHKVKL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02187 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Cca07g02187 220 Gene3D - 63 136 - -
Cca07g02187 220 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 148 - -
Cca07g02187 220 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Cca07g02187 220 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Cca07g02187 220 CDD SANT 11 56 IPR001005 -
Cca07g02187 220 CDD SANT 65 107 IPR001005 -
Cca07g02187 220 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 148 - -
Cca07g02187 220 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Cca07g02187 220 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Cca07g02187 220 Gene3D - 9 61 - -
Cca07g02187 220 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Cca07g02187 220 SMART sant 8 58 IPR001005 -
Cca07g02187 220 SMART sant 61 109 IPR001005 -
Cca07g02187 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02187 Cca-Chr7 50067229 50080925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02187 2 181 MYB Transcription Factor Family AT1G66370 45.933 1.03e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g02187 Myb_DNA-binding 6.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02187 - K16166 gmx:100781091 338.576