Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02183 ATGGAGAACGTTTCCAAACCAAAGAAGGAAAATCAGCAGTTTGAATTGCCACTCGGTTTTAGATTTCATCCAACAGATGAAGAACTCATAAATCACTACCTCACCAAGAAGGTTGTTGACAACTGTTTCTGTGCTTTGGCCATTGGTGAGGTTGATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGGTTGGCTAAAATGGGTGAAACTGAGTGGTATTATTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTTAAGGACTAATAGGGCCACTGATGCTGGTTATTGGAAGGCCACAGGAAAAGATAAGGAGATAATAATGCAAAATGCACTCATTGGGATGAAGAAAACCTTGGTTTTCTACAAGGGAAGAGCTCCCAAAGGTGAAAAGACAAACTGGATTATCCATGAATATAGGTTGGAAGGGAAACATAATCAACTCAAACCAGGAAAGAGTGAATGGGTTATTTGTAGAGTCTTCGAGAAGAGTCATCGTGGAAAAAAAATGCATGTTCCAAAGTGTGGGAGATTCAAGTTGAACTCCTTTGGAGTGGAACCATCATCACATGCTTCTCAATTGCCTCCTTTGATGGATTCTTCTCCATACAACAGTGAAACAAGAGCCACTGCTGGTGAATTGTCTCAGTTGACCTGCTTCTCTGATCAGAACACTCATGATGACATTGTGGAAAGCATGGAAACTCCTATGTTGGACTTTTCACCCTCTTCAAGACCTGATGGTGATGTTTCCGCTTCAGCCAAAGCAACCCTTTCAGTCTCAAATCAATCAACACAGATTGCACACCAAATTGGAAACTCTCAGTGCCTAGATTATTGTTATGTGCCTCAAGAGCAGTCCATGTTGAGAATGCTGATGGAAAACCGTGGATCAAGTGCAATGCAATTTCAGAAAACTGAGTTTTCTGAGGGAAGAGACTTCGATGCTGATACATCTTTTGTGATATACAACAACAATGACATGATACACAATATGTTTGGTAATCAAGATCATTCATCAGCTTCTATTGGACCTGTGGACACCAATTGCCTATGGAATTACTGA 1065 0.4113 MENVSKPKKENQQFELPLGFRFHPTDEELINHYLTKKVVDNCFCALAIGEVDLNKCEPWDLPGLAKMGETEWYYFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIIMQNALIGMKKTLVFYKGRAPKGEKTNWIIHEYRLEGKHNQLKPGKSEWVICRVFEKSHRGKKMHVPKCGRFKLNSFGVEPSSHASQLPPLMDSSPYNSETRATAGELSQLTCFSDQNTHDDIVESMETPMLDFSPSSRPDGDVSASAKATLSVSNQSTQIAHQIGNSQCLDYCYVPQEQSMLRMLMENRGSSAMQFQKTEFSEGRDFDADTSFVIYNNNDMIHNMFGNQDHSSASIGPVDTNCLWNY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02183 354 Gene3D NAC domain 25 168 IPR036093 GO:0003677|GO:0006355
Cca07g02183 354 ProSiteProfiles NAC domain profile. 16 163 IPR003441 GO:0003677|GO:0006355
Cca07g02183 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 350 - -
Cca07g02183 354 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 9 350 - -
Cca07g02183 354 SUPERFAMILY NAC domain 13 163 IPR036093 GO:0003677|GO:0006355
Cca07g02183 354 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02183 Cca-Chr7 49995789 49997765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02183 15 354 NAC Transcription Factor Family AT5G07680 49.568 1.84e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca07g02183 NAM 7.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02183 - - gmx:100782172 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02183 07 49995789 49997765 Cca07g02183 07 49995789 49997765 ECH
Cca07g02183 07 49995789 49997765 Cca09g00238 09 5748958 5751207 ECH