Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02178 ATGGCGGTGAAACCGACGAAAGCGCAGAAGAAGGTAGCGTACGATGCTAAACTGTGCCGGCTTCTGGACACTTACACACAAATTCTGGTGGTGGCTGCTGACAACGTGGGATCTAACCAGCTTCAGAACATTCGAAAGGGTCTACGTGGCGACTCCATTGTGCTCATGGGAAAGAACACCATGATGAAGCGCTCTATAAAGCTCCACTCCGAAGCCACTGGCAACAACATCTACCTCAACCTTGTTCCCCTTCTAGTGGGTAACGTGGGGTTGATTTTCACCAAAGGGGACGTGAAGGAGGTTAGCGAAGTTGTTGCTAAGTACAAGGTGGGAGCTCCTGCTCGTGTTGGATTAGTTGCACCTATTGATGTTGTTGTTCCTCCAGGCAACACAGGGCTGGATCCCTCTCAGACTTCTTTCTTCCAGGTGCTTAACATTCCTACCAAGATTAATAAGGGTACTGTGGAAATTATCACCCCTGTGGAATTGATTAAGAAGGGAGAGAAGGTTGGCTCTTCAGAATCAGCATTGCTTTCCAAGCTtgggataaggccattctcttatgggcttgttgtggtttctgtttatgacaatggttcagtttttagccctgaggttcttgacctcactgatgatgacctcgttgagaggtttgctcttgGTGTGTCCATGGTGTCTTCTCTTTCCTTGGCTATCTCATACCCTACAATTGCAGCTGCACCACACATGTTTGTCAATGCCTACAAGAACATCCTCTCCGTTGCACTCGCAACAGAATATTCCTTCCCTCAGGCAGACAAAGTTAAGGACTACTTGAAGGATCCTAGTAAATTtgctgtagctgttgttgcagtacctgctggtggtggcactgctccagctgctgcAACGAAGGAGGAGGCAAAGAAGGAAGAATCGGAAGAAGAATCTGATACTGACATGGGCTTTGGTTTGTTTGATTAA 963 0.3853 MAVKPTKAQKKVAYDAKLCRLLDTYTQILVVAADNVGSNQLQNIRKGLRGDSIVLMGKNTMMKRSIKLHSEATGNNIYLNLVPLLVGNVGLIFTKGDVKEVSEVVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLSKLGIRPFSYGLVVVSVYDNGSVFSPEVLDLTDDDLVERFALGVSMVSSLSLAISYPTIAAAPHMFVNAYKNILSVALATEYSFPQADKVKDYLKDPSKFAVAVVAVPAGGGTAPAAATKEEAKKEESEEESDTDMGFGLFD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02178 320 Gene3D - 114 185 IPR043164 -
Cca07g02178 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 320 - -
Cca07g02178 320 MobiDBLite consensus disorder prediction 289 320 - -
Cca07g02178 320 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Cca07g02178 320 CDD Ribosomal_P0_L10e 9 185 - -
Cca07g02178 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Cca07g02178 320 Gene3D - 6 209 IPR043141 -
Cca07g02178 320 PIRSF L10E 1 320 IPR030670 GO:0042254
Cca07g02178 320 Pfam 60s Acidic ribosomal protein 234 319 - -
Cca07g02178 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 320 - -
Cca07g02178 320 Pfam Ribosomal protein L10 8 108 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02178 Cca-Chr7 49947016 49949878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02178 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 78.997 2.84e-180 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02178 K02941 - vvi:100250067 496.123