Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02175 ATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTGCATGGTGTCACATGTCAAGGGTTATGGGGGTTGGACCAATGCACATGCCACTTTCTATGGAGGAGGTGATGCTTCCGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTATATAGCCAAGGCTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGCTTGAGCTGTGGTGCATGCTTTGAAATCAAGTGTGTGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACCAATTTTTGTCCTCCTGGTGGTTGGTGTGACCCTCCCCAGCACCACTTTGATCTCTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATAAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTGACGAATGTTGGAGGTGCTGGTGATGTGCATTCCGTGTCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGAAACTGGGGGCAAAACTGGCAAAGCAACTCATACCTGAATGGACAGAGCCTTTCCTTTGTAGTCACTACCAGCAATGGACACAGTGTGGTCTCATACAATGCTGCCCCAGCTAGTTGGTCCTTTGGACAGACCTACACTGGAAGGCAATTCAACTACTAA 720 0.4806 MALLGFLLGLFCMVSHVKGYGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIIVTATNFCPPGGWCDPPQHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNAAPASWSFGQTYTGRQFNY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02175 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 234 IPR007117 -
Cca07g02175 239 Gene3D - 12 141 IPR036908 -
Cca07g02175 239 SMART dpbb_1 58 135 IPR007112 -
Cca07g02175 239 Gene3D - 145 237 IPR036749 -
Cca07g02175 239 Pfam Lytic transglycolase 58 135 IPR009009 -
Cca07g02175 239 Pfam Expansin C-terminal domain 146 223 IPR007117 -
Cca07g02175 239 PRINTS Expansin/Lol pI family signature 22 37 IPR007118 GO:0005576
Cca07g02175 239 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Cca07g02175 239 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Cca07g02175 239 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Cca07g02175 239 PRINTS Expansin/Lol pI family signature 182 196 IPR007118 GO:0005576
Cca07g02175 239 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Cca07g02175 239 PANTHER EXPANSIN 5 238 - -
Cca07g02175 239 SUPERFAMILY PHL pollen allergen 142 234 IPR036749 -
Cca07g02175 239 SUPERFAMILY Barwin-like endoglucanases 22 163 IPR036908 -
Cca07g02175 239 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Cca07g02175 239 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Cca07g02175 239 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Cca07g02175 239 PRINTS Expansin signature 103 120 IPR002963 GO:0009664
Cca07g02175 239 PRINTS Expansin signature 120 133 IPR002963 GO:0009664
Cca07g02175 239 PRINTS Expansin signature 144 156 IPR002963 GO:0009664
Cca07g02175 239 PRINTS Expansin signature 156 177 IPR002963 GO:0009664
Cca07g02175 239 PRINTS Expansin signature 191 212 IPR002963 GO:0009664
Cca07g02175 239 PRINTS Expansin signature 220 236 IPR002963 GO:0009664
Cca07g02175 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 145 IPR007112 -
Cca07g02175 239 PANTHER EXPANSIN-A15 5 238 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02175 Cca-Chr7 49913654 49915078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02175 1 237 Expansin Gene Family AT2G03090 78.715 2.99e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02175 K20628 - gmx:100790170 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02175 07 49913654 49915078 Cca03g00593 03 10292948 10295443 ECH
Cca07g02175 07 49913654 49915078 Cca11g01970 11 45092336 45096033 ECH
Cca07g02175 07 49913654 49915078 Cca07g02175 07 49913654 49915078 ECH
Cca07g02175 07 49913654 49915078 Cca09g00234 09 5605522 5607699 ECH
Cca06g00635 06 18003590 18005898 Cca07g02175 07 49913654 49915078 ECH