Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02156 ATGTCAGAAAAAGTTCCCAACAATTCGTCCTTGAATGTTCCTTTACTACCCGAGTGGAATCACCATGATGAAGAGAAAGCCGTGACTTCTCATCCTTCTACCAAAAATACAGTATCCTTCTTTCGCACCTGTATTAATGGACTTAATGCAATATCAGGTGTTGGGATACTCTCAGTTCCATATGCTCTTGCATCTGGAGGGTGGCTAAGCTTGGCTCTTCTGTTTGCTATTGCCGCTGCAGCATTTTACTCAGGACTTTTGATCAAAAAATGTATGGATAAGAATTCCAACATTAGAAGCTACCCTGATATAGGTGAGCTTGCATTTGGAAAGATAGGGAGGCTAATAGTATCAGTGTCCATGTACACTGAGCTCTACTTAGTTTCAATAGGATTTTTGATTCTAGAAGGTGATAACTTGAGCAACTTGTTCCCTATTGAGGAGGTTCAAATAGGTGGATTTGCAATTGGTGGGAAGCAGTTCTTTGTGATATTGGTTTCCCTTATTATCTTGCCAACAGTTTGGTTGGATAGTTTGAGTCTACTTTCTTATGTATCTGCAAGTGGAGTTTTTGCTTCTATTGTCATCATTCTCTCAATATCATGGACTGCAACATTTGATGGAGTTGGTTTTCATCAAAAGGGAACTCTTCTTAATTGGAATGGAATCCCCACAGCGGTTAGCTTGTATGCTTTTTGCTACTGTGCACATCCAGTCTTTCCCACTTTGTACAATTCCATGACAAACAAACACCACTTCTCTAATGTCCTACTTGTATGCTTTGTGTTAACCACTGCTGGTTATGCATCGATGGCTATAATTGGTTACCTAATGTTTGGCTCACAAGTTGAATCACAAGTGACATTAAACCTGCCACTGAACAAAGTAAGCTCAAAATTGGCAATATATACTACTTTGGTGAATCCCATATCCAAGTTTGCTTTGATGGCAACACCAATTACCAATGCTTTGAAAGACTTTCTTCCGGTTTCATATAAGAATAGAGTGACCAGCATCTTAGTGAGCACTGTGTTGGTAATAAGCACTACCATTGTTGCCCTCGCTGTTCCTTTCTTTGGGTATCTCATGTCCCTGGTTGGAGCGTTTCTAAGTGTCACAGCTTCTATTCTGCTTCCATGCTTGTGTTACTTGAAGATTTCAGGCACTTACAGGAAATTTGGGAGTGAAACGGTGGCCATAGTAGCAATAATAATAGCAGGTATAGCAATGGGAATATCCGGGACTTACACATCTGTCAGGGACATAGTGCAACATTTGTAA 1281 0.402 MSEKVPNNSSLNVPLLPEWNHHDEEKAVTSHPSTKNTVSFFRTCINGLNAISGVGILSVPYALASGGWLSLALLFAIAAAAFYSGLLIKKCMDKNSNIRSYPDIGELAFGKIGRLIVSVSMYTELYLVSIGFLILEGDNLSNLFPIEEVQIGGFAIGGKQFFVILVSLIILPTVWLDSLSLLSYVSASGVFASIVIILSISWTATFDGVGFHQKGTLLNWNGIPTAVSLYAFCYCAHPVFPTLYNSMTNKHHFSNVLLVCFVLTTAGYASMAIIGYLMFGSQVESQVTLNLPLNKVSSKLAIYTTLVNPISKFALMATPITNALKDFLPVSYKNRVTSILVSTVLVISTTIVALAVPFFGYLMSLVGAFLSVTASILLPCLCYLKISGTYRKFGSETVAIVAIIIAGIAMGISGTYTSVRDIVQHL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02156 426 Pfam Transmembrane amino acid transporter protein 37 417 IPR013057 -
Cca07g02156 426 PANTHER OS05G0424000 PROTEIN-RELATED 33 423 - -
Cca07g02156 426 PANTHER AMINO ACID TRANSPORTER AVT1J 33 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02156 Cca-Chr7 49715496 49718119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02156 24 423 Amino Acid or Auxin Permease AAAP Family AT3G28960 59.601 1.82e-175 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02156 K15015 - gmx:100794374 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02156 07 49715496 49718119 Cca07g02156 07 49715496 49718119 ECH