Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02155 ATGGAGGGGAGCAACCAAAACACGTTTAGCTTCATGGCTAACACGCTTGAGCCCCCAAGTCCAAGCACCCTTGACCCGGAGGCATCATCCTCATCATCCCCTGCTTTTTCCTTCGCCAGACTCGCAGAGTGCTACCCCCCTGGCTTTTCCAGAAAGGTGTTTGCGGAGGTTATAGGGACATTTCTGTTGGTGTTTGTGGGGAGTGGGTCTGCGGGGCTGAGTGCTATCGATGCAAGCAAGGTGTCGAAGCTTGGAGCCTCACTCGCGGGAGGGCTCATAGTGACGGTCATGATTTACTCCATTGGCCACATCTCTGGCGCACACATGAACCCAGCGGTGTCCCTCGCTTTTGCAGCCGTCAGGCATTTTCCCTGGCCACAGGTCCCATTTTATATAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATATACATTGCGAGAGCTGTTTCAACCATCAAAGGAAATTGGGGCAACTTCACCTGCTGGATCACACATTCAAGCACTAATCATGGAAATGGTATCCACTTTCACTATGGTGTTCATCTCCATGGCCGTGGCCACTGACACAAACGCTACAGGACAGCTGTCAGGAGTAGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTTGCCGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACTTCATCATACAAGGGACTTTGGGTATATTTTGTTGGACCGATTACTGGGGCAGTGTTAGCAGCATGGTCTTACAATGTGATTAGGGACACCGAACACCCTGGTTTCCCTTTTTCACTATCCTCCCTCTCATTCAAGATTCGCCAAGGCATTGGTGGAAATGATCAAGATGCCAAAAACAGCCACCGATGCTTGGTGTGA 894 0.5034 MEGSNQNTFSFMANTLEPPSPSTLDPEASSSSSPAFSFARLAECYPPGFSRKVFAEVIGTFLLVFVGSGSAGLSAIDASKVSKLGASLAGGLIVTVMIYSIGHISGAHMNPAVSLAFAAVRHFPWPQVPFYIAAQLTGAISASYTLRELFQPSKEIGATSPAGSHIQALIMEMVSTFTMVFISMAVATDTNATGQLSGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATSSYKGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPFSLSSLSFKIRQGIGGNDQDAKNSHRCLV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02155 297 Pfam Major intrinsic protein 48 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g02155 297 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g02155 297 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g02155 297 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g02155 297 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g02155 297 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g02155 297 PRINTS Major intrinsic protein family signature 239 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g02155 297 CDD MIP 51 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g02155 297 Gene3D Glycerol uptake facilitator protein. 27 265 IPR023271 -
Cca07g02155 297 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 44 272 - -
Cca07g02155 297 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Cca07g02155 297 PANTHER AQUAPORIN NIP2-1 44 272 IPR034294 -
Cca07g02155 297 SUPERFAMILY Aquaporin-like 43 265 IPR023271 -
Cca07g02155 297 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02155 Cca-Chr7 49661136 49665178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02155 50 265 Major Intrinsic Protein MIP AT5G37820 49.309 3.48e-69 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02155 K09874 - gmx:100788071 452.981