Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02154 ATGCACAAGGAGAAGGTTCCGGAGTCGCTCAAGCTTCAGAGGAAGAGGAAAAACGACGCCATTGCAGTTGAGATTGGGGCCATGAGGAAGCGAAAATCGGCGGAGGCGTTGGCCAGTAGGAGGAAGCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAGGAAGAAGGAATCGCAATTGAATTTGCATTCGCATTTGCATTTTAATCACGATTTGCCGAAAGAGCCTGCTGGTTATGGTGACAGTTCAGTTCTTGAGGCTGAATTGAAAGCAATTTTATTGGGTCTCAAATTGGCTTGGTCAAGAGGTTTTAGGAACATAAGAGTTGATTCTGATTCCAAATTGGAAGTGAATTTGCTGTCAAATGGTTTGCAGTACCCTTTCTACAACATTATTAGATCAATCCATGAAGTGCAATCTAATTTGCGTCAGGTTGATAACATGGGATCCTCAACCACTCAACACCACATTTCAATTCCCATAGCAGAATTGAGTGCATCACTTGAAGCTGAAAAGGAAGAAAAGCCTGTAACCGATGACTATGTGGAAAATATCCCAAAACCTGAAGAGAAGAGTGAAGCCAAGAATCAAAAAACTGAAGAGAAGGGAGAATGCCGCTACTGTAGGGAGGAGGACTTTGTTTCTAAACTGGAATCACCTTGCAATTGCACTGGCAGCTTGAAGTATGTTCACAGGAGCTGCATTGACCAATGGTGCAATTCCAAAGGCTGCGTCATATTGTGTGAGATTTGCAGGAAGCCTTACAATCCAGATTTTCCGATTGAGGCACTTCTTTCTGATGATGATGATCGATATCACACAGAGATGAGTGAGGAATATTGGAGGATTCCGGGAACAAACACTCAATTTCGGCGTCCTTTGGTGCTGTTAGAGCGTGGCATCAACAGCGTCATCGCATCAATGAATAAAGACTTCAACTGGAGAAAACCCACTGGAGGCATGATGCTTGGAATGTCACTCCTCTTCTTGATCGCGGTGCTAATTGTAAAGGATGCCATTAACTGTATACCACCCGAGGAGGAAAATTTTTCCCGTTTCTTGTACTGTCTTCGATCACCAAAACTTGAAGCAGCAGCGATCCTGGAAAGAGGAGTGGAAGGCTAG 1140 0.4412 MHKEKVPESLKLQRKRKNDAIAVEIGAMRKRKSAEALASRRKQLELIRMVLQREVEKKRKKESQLNLHSHLHFNHDLPKEPAGYGDSSVLEAELKAILLGLKLAWSRGFRNIRVDSDSKLEVNLLSNGLQYPFYNIIRSIHEVQSNLRQVDNMGSSTTQHHISIPIAELSASLEAEKEEKPVTDDYVENIPKPEEKSEAKNQKTEEKGECRYCREEDFVSKLESPCNCTGSLKYVHRSCIDQWCNSKGCVILCEICRKPYNPDFPIEALLSDDDDRYHTEMSEEYWRIPGTNTQFRRPLVLLERGINSVIASMNKDFNWRKPTGGMMLGMSLLFLIAVLIVKDAINCIPPEEENFSRFLYCLRSPKLEAAAILERGVEG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02154 379 Gene3D - 57 175 IPR036397 GO:0003676
Cca07g02154 379 SUPERFAMILY Ribonuclease H-like 82 145 IPR012337 -
Cca07g02154 379 ProSiteProfiles Zinc finger RING-CH-type profile. 202 263 IPR011016 GO:0008270
Cca07g02154 379 CDD RNase_H_like 85 150 IPR044730 -
Cca07g02154 379 Pfam Reverse transcriptase-like 87 149 IPR002156 GO:0003676|GO:0004523
Cca07g02154 379 Pfam RING-variant domain 210 256 IPR011016 GO:0008270
Cca07g02154 379 SUPERFAMILY RING/U-box 206 261 - -
Cca07g02154 379 Coils Coil 34 61 - -
Cca07g02154 379 SMART ringv_2 209 257 IPR011016 GO:0008270
Cca07g02154 379 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 168 362 IPR033275 -
Cca07g02154 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 267 IPR013083 -
Cca07g02154 379 CDD RING_CH-C4HC3_MARCH 210 257 - -
Cca07g02154 379 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 168 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02154 Cca-Chr7 49638045 49650087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02154 173 260 C3H Transcription Factor Family AT1G50440 30.108 2.11e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02154 - - ccaj:114915152 376.326