Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02152 ATGGACATAACCCCAACAACAACGATCAGCAACACTCCGAGTGCAACAAAATCCCCAGAAAATCATGAGACTGAAACACCCAGCAGGATCAACACGCCCACACCCACACCCACACCCCCACGCACAGCAACAACAAAAACCTTGTCTTTCTCCAACGGGGTCCTCAAGCGccaccaccaccaccacccctccaTTCCCGCCGCCGTCACCTACAAAGAATGCCTCAAAAACCACGCAGCCAACCTAGGCGGCCACGCCCTCGATGGCTGCGGCGAGTTCATGCAGTCCCCCGCCGCTACCGCCGCCGACCCCACCTCCCTAAAATGCGCCGCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCATCGAGTACCAGCCCCACCACCGGCACCACCCTCCGCCGCCTTTTCATGCGGCCACCCGCAGCCCGAATTCGGCCTCCCCGCCGCCGATCTCCTCCTCCTACTACCCCTCGGCGCCGCACATGCTCCTGGCCCTCTCCGCCGGCCTTGCCGCTCCGCCCGAGAGCACCGCCGCCCCCTCCCCCCTTGCCTCCCACAGCCGCAAGAGGTTCCGAACCAAGTTCAGCCAGGAGCAGAAAGAGAAGATGCACAAGTTCGCGGAGAAAGTTGGGTGGAAGATGCAGAAGCGTGACGAAGATTTGATTCACGAtttttgcaacgaggttggcgtcgatagaagcgttctcaagAGCTTTGAAGTTCCCACCAACAACGATGCTGTTGCCGTTCCTGAAGATCGCTCTCAGGATCCCACTCGGAATCATCGCTATGGTGGAGCCAACGTTGGTGCCAATGGGTCCTCGTCTTCTTCTTGA 1155 0.3913 MDITPTTTISNTPSATKSPENHETETPSRINTPTPTPTPPRTATTKTLSFSNGVLKRHHHHHPSIPAAVTYKECLKNHAANLGGHALDGCGEFMQSPAATAADPTSLKCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIEYQPHHRHHPPPPFHAATRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSPLASHSRKRFRTKFSQEQKEKMHKFAEKVGWKMQKRDEDLIHDFCNEVGVDRSVLKSFEVPTNNDAVAVPEDRSQDPTRNHRYGGANVGANGSSSSS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02152 384 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 225 346 - -
Cca07g02152 384 SUPERFAMILY Homeodomain-like 285 343 IPR009057 -
Cca07g02152 384 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 111 - -
Cca07g02152 384 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 294 343 IPR006455 -
Cca07g02152 384 MobiDBLite consensus disorder prediction 348 384 - -
Cca07g02152 384 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 225 346 - -
Cca07g02152 384 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 111 - -
Cca07g02152 384 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 111 IPR006456 -
Cca07g02152 384 MobiDBLite consensus disorder prediction 1 63 - -
Cca07g02152 384 MobiDBLite consensus disorder prediction 1 31 - -
Cca07g02152 384 MobiDBLite consensus disorder prediction 224 260 - -
Cca07g02152 384 Gene3D - 281 351 - -
Cca07g02152 384 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Cca07g02152 384 MobiDBLite consensus disorder prediction 278 300 - -
Cca07g02152 384 Pfam ZF-HD protein dimerisation region 69 111 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02152 Cca-Chr7 49598917 49600179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02152 267 345 ZF-HD Transcription Factor Family AT3G28920 55.294 8.29e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca07g02152 ZF-HD_dimer 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02152 - - gmx:100786999 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00226 09 5235954 5237737 Cca07g02152 07 49598917 49600179 PCT