Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02151 ATGAGAAAAAACCATCACAGATCCCACACATTTCATGCATTATTCAGAGAAGAGGCTCTGCGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGCCCCTCAAACAAACAGGCCCAACCTGATCCAAACCAGTGGAATGGTAGCGGATATTATGGATACGCTCAAGAAATTCAAATTGTGGAAAATCTAGCTGAAGTTGAGAAGTTAGTCAAAAGCAAATCAAATGAAGAAAAGGCTAAAGAAGCTGCTGTTGAAAAAGATCCTAATACGTTGGAGTGTCCACTCAATGCGTTTTCCCTTTTCTTGCAAAAATTTAAAAAACTTTACAATGAAGCAAATCTTGATTCCGAAAATGTTGAAAGGGTTAATAAAATGGCTGTTAAAACATGGAAGTCCATGACAAATGAGGAAAAAAAGACTTATTTTGATACAGCAGCTAAACTCAACGCAGAGGCTAAGAAATTGCAGCATATTGCATTAAATGAAAGGTTGGCTCAGTCTAATCAAATAGGTAAATGCACTCCACTTGGCACAAGTAGAACAATCAATGATTTTCAAGTAAAACAAATGGGGAAAAGAGAACATAAGCCCAAAGTTCATTTTGATATGACTAACTTGGATAAGTCAAAAAAGGGAAAAACTCACAAGAAACAACATAAGCAGAACATTCAAAATAAGGAAAATCTTGCTAAAACCATTCAGGTTTTAGAGTGA 738 0.3686 MRKNHHRSHTFHALFREEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGYYGYAQEIQIVENLAEVEKLVKSKSNEEKAKEAAVEKDPNTLECPLNAFSLFLQKFKKLYNEANLDSENVERVNKMAVKTWKSMTNEEKKTYFDTAAKLNAEAKKLQHIALNERLAQSNQIGKCTPLGTSRTINDFQVKQMGKREHKPKVHFDMTNLDKSKKGKTHKKQHKQNIQNKENLAKTIQVLE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02151 245 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 99 162 IPR009071 -
Cca07g02151 245 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 63 165 - -
Cca07g02151 245 Gene3D High mobility group box domain 73 165 IPR036910 -
Cca07g02151 245 Pfam HMG (high mobility group) box 102 162 IPR009071 -
Cca07g02151 245 SUPERFAMILY HMG-box 87 159 IPR036910 -
Cca07g02151 245 MobiDBLite consensus disorder prediction 216 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02151 Cca-Chr7 49575104 49578081 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca07g02151 HMG_box 2e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02151 - - ccaj:109818511 209.92