Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02150 ATGAAGAAGCGTCAAGTGGCTGTGAAAAGAGAAGAGCCAGCGAGAAGCTCAAACAATTCAACTCTGAGAACTGTGACGACTGTGACATATGGTGAATGCCAGAAGAATCTAGCCCTTCATATCGGAGGATATGCTCTGGATGGTTGTGGGGAATTCATGGCTAATGGGGCTGAAGGAACTGCTGCTGCTATGACTTGTGCTGCCTGTGGTTGCCACAAGAACTTTCATAGGAGGGCGGTTCACATACAGATTGTCTGTAACTGTTCTTCCCTTCCCACCACCAGTGGATCTTCGAGAGTATGA 303 0.4785 MKKRQVAVKREEPARSSNNSTLRTVTTVTYGECQKNLALHIGGYALDGCGEFMANGAEGTAAAMTCAACGCHKNFHRRAVHIQIVCNCSSLPTTSGSSRV 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02150 100 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 91 - -
Cca07g02150 100 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cca07g02150 100 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Cca07g02150 100 MobiDBLite consensus disorder prediction 1 20 - -
Cca07g02150 100 PANTHER MINI ZINC FINGER PROTEIN 2-LIKE 10 91 - -
Cca07g02150 100 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02150 Cca-Chr7 49561168 49561833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02150 1 94 Zinc finger-homeobox gene family AT3G28917 57.143 1.83e-32 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca07g02150 ZF-HD_dimer 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02150 - - dzi:111292097 130.568