Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca07g02150 | ATGAAGAAGCGTCAAGTGGCTGTGAAAAGAGAAGAGCCAGCGAGAAGCTCAAACAATTCAACTCTGAGAACTGTGACGACTGTGACATATGGTGAATGCCAGAAGAATCTAGCCCTTCATATCGGAGGATATGCTCTGGATGGTTGTGGGGAATTCATGGCTAATGGGGCTGAAGGAACTGCTGCTGCTATGACTTGTGCTGCCTGTGGTTGCCACAAGAACTTTCATAGGAGGGCGGTTCACATACAGATTGTCTGTAACTGTTCTTCCCTTCCCACCACCAGTGGATCTTCGAGAGTATGA | 303 | 0.4785 | MKKRQVAVKREEPARSSNNSTLRTVTTVTYGECQKNLALHIGGYALDGCGEFMANGAEGTAAAMTCAACGCHKNFHRRAVHIQIVCNCSSLPTTSGSSRV | 100 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca07g02150 | 100 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 10 | 91 | - | - | |
Cca07g02150 | 100 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 30 | 79 | IPR006456 | - | |
Cca07g02150 | 100 | Pfam | ZF-HD protein dimerisation region | 28 | 80 | IPR006456 | - | |
Cca07g02150 | 100 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cca07g02150 | 100 | PANTHER | MINI ZINC FINGER PROTEIN 2-LIKE | 10 | 91 | - | - | |
Cca07g02150 | 100 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 29 | 79 | IPR006456 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca07g02150 | Cca-Chr7 | 49561168 | 49561833 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca07g02150 | 1 | 94 | Zinc finger-homeobox gene family | AT3G28917 | 57.143 | 1.83e-32 | 107 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Cca07g02150 | ZF-HD_dimer | 2.7e-27 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca07g02150 | - | - | dzi:111292097 | 130.568 |