Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02145 ATGGTTGCACTTGATAAGAGGCCCAAGGGGAGGCCATCTGGCTCAAAGAATAAGCCCAAATCAGCCATGGACATGTTCAAACCCATAATCTTGATAATTTCAACTGGCATGAACATTATCGATGCCATCATCGACTTTAGTCACAAGAAGGATGTCAGCATCGCTGTGCACCATGCTTCGGGTGCCATATCTGAGGTTAACATTTTCAACCCTTTACCCCCTTCTAATTGTTGGTCCTTTCAAGGAAACTTGCATATGTTTTATCTCTCAGGCTTTTATACCAAAAGCATTTCACCTTTTCCCCCTAACAACGTTCCTTATTCCTCCTTTAACATTCAATTCTCAATGGATTGGGTCCACCAAACCTTTGGTGGCCTTGTCGGACGCAAGTTGATTGCTGCGGAACCTGTGCATGTCTTTGCTTCTATCTTCAAGGAGAACGAGTGTGAAGGGGTGGTGAATCCTATCGCAAATCCAAATGTTCAATCTGTTATGATGAGTACTCATGTTACCCATTGTGTTGCTGATGCTTTTGTTGCCAACACTGACAACACAGTCTATCACCCTAGTTTCTCTATTGGAGCTTCAACCTCATCATCTTCAATGAATGACCAACCTCTTGATGCTTCTCCTGGAGATGTGAACATGCTTTATTGGAACGACCCCACCAACTAG 675 0.4356 MVALDKRPKGRPSGSKNKPKSAMDMFKPIILIISTGMNIIDAIIDFSHKKDVSIAVHHASGAISEVNIFNPLPPSNCWSFQGNLHMFYLSGFYTKSISPFPPNNVPYSSFNIQFSMDWVHQTFGGLVGRKLIAAEPVHVFASIFKENECEGVVNPIANPNVQSVMMSTHVTHCVADAFVANTDNTVYHPSFSIGASTSSSSMNDQPLDASPGDVNMLYWNDPTN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02145 224 Pfam Plants and Prokaryotes Conserved (PCC) domain 27 145 IPR005175 -
Cca07g02145 224 MobiDBLite consensus disorder prediction 1 21 - -
Cca07g02145 224 ProSiteProfiles PPC domain profile profile. 20 165 IPR005175 -
Cca07g02145 224 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 185 IPR014476 GO:0003680
Cca07g02145 224 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 4 185 - -
Cca07g02145 224 SUPERFAMILY AF0104/ALDC/Ptd012-like 24 155 - -
Cca07g02145 224 Gene3D - 27 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02145 Cca-Chr7 49440432 49441106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02145 2 144 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 29.677 7.32e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02145 - - ccaj:109801644 458.759