Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02141 ATGGGTGTAAATAATGTTGTGAGAAGGACCAAAGAAATTCAAAGCCACCGTGGGAGGACAACACCATGTGCCTATTGGTTAGCTGGGAGATGCAACAGAAACCCATGCAAATTTTTGCACACATCACCACCCCATACTACCTATCATTATGCCAATAATCCCTACACATACACAAGGAAACCCCATTCTTCCTCTCACTCTAACTCAAAGACAGCGCTCACAAAAAATAATAGAGATGAGACAAAGCCTAATCACAAATCATCATTGCCAAATCCAAGCATATGTAAATATTGGGTAAATGACAATTGCACCTATGGTCAAAAATGTCGCAATTTGCATTCATGGTTTCTAGGTGATCGCCTTTCCTCCCTCACAAAACTTCAAGATCACAAGAAGGTTATCACTGGAATTGCACTTCCGGTTGGATCCGACAAACTTTACTCTGGAAGTACTGATGGAACAGTCCGGATATGGGACTATCATACTGGTGTATGTACTAATGTGATAAACTTTGGCGTCAAAATCACTTCTTTGATCAGAGAGGGATCATGGGTTTTTGTTGGTATACTGAATGCTATCAAGGCTTGTAACATTCAAACTTTATCAGAGTTTACTCTTGATGGACCTAAAGGCCAAGTCCTTTCCATGATTGTTGGCAATGACACACTTTTTGCTGCAGCGGAGGATGGTGTCATTTATGCATGGAGAGACAATTCTGAATCCTCCGTTGAATTGGTCGCAAGACTAACTGGCCACTCTAAAGCTGTGGTTTGTCTTACTGTTGGACGGAAGAGACTGTACTCGGGTTCCATGGATCAAAGCATTAAGGTTTGGAACATATATACATTTGAGTGTGAAATGACACTCAACGGGCATACCGATGTAGTCACATCTCTTATATGTTGGGACCATCATTTGTTATCAAGTTCACTTGACTGCACAATTAAGGTCTGGTCCGCTACTGGGGAGAAAACTTTACAAGACATATACATGCTAGAAGAGACATACACACACACTTTGGAAAATGGTGTTGTTGCACTTTCCGGGATGACTGATGCAGAAGCCAATCATATACTGTTTTGCTCATGCAAAGACAATTCAGTTCGCTTGTATGAACTGCCATCATTTTTAGAGAGGGGTCGTTTGTTTAGTAAGAAAGAGGTTGCAAGTTTTGAGTTAGGTCCTGATGGACTCTTTTTCACGGGAGACGGGACTGGTTTGCTGACAGTATGGAAATGGTTGGATGTCAAGGTGGCATCGGTTCAACATCTTGCTTAG 1278 0.4171 MGVNNVVRRTKEIQSHRGRTTPCAYWLAGRCNRNPCKFLHTSPPHTTYHYANNPYTYTRKPHSSSHSNSKTALTKNNRDETKPNHKSSLPNPSICKYWVNDNCTYGQKCRNLHSWFLGDRLSSLTKLQDHKKVITGIALPVGSDKLYSGSTDGTVRIWDYHTGVCTNVINFGVKITSLIREGSWVFVGILNAIKACNIQTLSEFTLDGPKGQVLSMIVGNDTLFAAAEDGVIYAWRDNSESSVELVARLTGHSKAVVCLTVGRKRLYSGSMDQSIKVWNIYTFECEMTLNGHTDVVTSLICWDHHLLSSSLDCTIKVWSATGEKTLQDIYMLEETYTHTLENGVVALSGMTDAEANHILFCSCKDNSVRLYELPSFLERGRLFSKKEVASFELGPDGLFFTGDGTGLLTVWKWLDVKVASVQHLA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02141 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 168 IPR001680 GO:0005515
Cca07g02141 425 Gene3D - 5 55 - -
Cca07g02141 425 SMART WD40_4 120 159 IPR001680 GO:0005515
Cca07g02141 425 SMART WD40_4 282 319 IPR001680 GO:0005515
Cca07g02141 425 SMART WD40_4 199 236 IPR001680 GO:0005515
Cca07g02141 425 SMART WD40_4 375 412 IPR001680 GO:0005515
Cca07g02141 425 SMART WD40_4 333 372 IPR001680 GO:0005515
Cca07g02141 425 SMART WD40_4 242 279 IPR001680 GO:0005515
Cca07g02141 425 MobiDBLite consensus disorder prediction 53 72 - -
Cca07g02141 425 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 15 416 - -
Cca07g02141 425 SUPERFAMILY WD40 repeat-like 126 418 IPR036322 GO:0005515
Cca07g02141 425 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Cca07g02141 425 SUPERFAMILY CCCH zinc finger 93 114 IPR036855 GO:0046872
Cca07g02141 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 163 - -
Cca07g02141 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 280 - -
Cca07g02141 425 SMART c3hfinal6 91 115 IPR000571 GO:0046872
Cca07g02141 425 SMART c3hfinal6 17 42 IPR000571 GO:0046872
Cca07g02141 425 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Cca07g02141 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 328 IPR001680 GO:0005515
Cca07g02141 425 PANTHER - 15 416 IPR044715 -
Cca07g02141 425 ProSiteProfiles Zinc finger C3H1-type profile. 17 43 IPR000571 GO:0046872
Cca07g02141 425 MobiDBLite consensus disorder prediction 53 88 - -
Cca07g02141 425 PRINTS G protein beta WD-40 repeat signature 146 160 IPR020472 -
Cca07g02141 425 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Cca07g02141 425 PRINTS G protein beta WD-40 repeat signature 306 320 IPR020472 -
Cca07g02141 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 288 IPR001680 GO:0005515
Cca07g02141 425 Gene3D - 98 423 IPR015943 GO:0005515
Cca07g02141 425 Pfam WD domain, G-beta repeat 284 319 IPR001680 GO:0005515
Cca07g02141 425 Pfam WD domain, G-beta repeat 246 279 IPR001680 GO:0005515
Cca07g02141 425 Pfam WD domain, G-beta repeat 124 159 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02141 Cca-Chr7 49343423 49346679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02141 126 372 Acyl Lipid Metabolism Gene Families AT3G18860 25.092 1.46e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca07g02141 WD40 0.0023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02141 - - gmx:100787799 545.043