Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02140 ATGAACCATATATCACTATCACATCACTTCCTCTCTCATTCTACCATGGCTTTCCCACCTTCTCACAGTTTCATGTTTAACACTCATGAAGAAGAACATCACGAACACCTCCCGTCAACCTCTCTCAACGACTTCCCTTCTTTGCCACCCCAACTCTTTCAAGTGGGTGCACCTTTTATGTTGAAGCAGTCCATGTCTTTTTCAGGCATTGACAACAAGTGCGATGCATTAGTGGATGGAGACGATGAGTTATCAGATGATGGAATCTTCCAGTGTGGGGAGAAGAAGAGGAGGCTGAATTTGGAACAGGTGAAGGCCCTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGACCTTGGGGTTGCAGCCAAGACAGATTGCCATATGGTTTCAGAATAGAAGGGCTAGATGGAAAACCAAGCAATTGGAGAAGGAATATGAAGTCCTCAAGAAGCAGTTTGAAGCAGTCAAGGCTCACAATGATGTTCTTAAAGTTCAGAACCAGAAACTACATGCAGAGTTACAAGCAGTGAAAAGTAGGGATTGGCCTGAAGCTGGAACAATCAGCCTTAACAAAGAAACTGAGGGTTCATGGGCCAATGGAAGTGGTAACAGCTTAGACATTAATTTAGATCTCTCAAGCACACCAGTTTTGAACAGTTCTGTATCTTCTCAAATACCTACTTTAAAGTCCACCAGCATAAACCAGATCCTTCAATCTTCGTCAAGGCCAGATCTTCAAGATGAAGCCTTCTGCAACATGCTTCACAACATCGATGCACAACAGAATTTTTGGCCCTGGCCTAATCAGCACCACCACCAATATTTTCATTGA 864 0.4352 MNHISLSHHFLSHSTMAFPPSHSFMFNTHEEEHHEHLPSTSLNDFPSLPPQLFQVGAPFMLKQSMSFSGIDNKCDALVDGDDELSDDGIFQCGEKKRRLNLEQVKALEKSFELGNKLEPERKVQLAKTLGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKAHNDVLKVQNQKLHAELQAVKSRDWPEAGTISLNKETEGSWANGSGNSLDINLDLSSTPVLNSSVSSQIPTLKSTSINQILQSSSRPDLQDEAFCNMLHNIDAQQNFWPWPNQHHHQYFH 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02140 287 SUPERFAMILY Homeodomain-like 91 152 IPR009057 -
Cca07g02140 287 Pfam Homeodomain 95 148 IPR001356 GO:0003677
Cca07g02140 287 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Cca07g02140 287 SMART HOX_1 93 154 IPR001356 GO:0003677
Cca07g02140 287 Gene3D - 93 157 - -
Cca07g02140 287 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Cca07g02140 287 Coils Coil 142 190 - -
Cca07g02140 287 CDD homeodomain 95 151 IPR001356 GO:0003677
Cca07g02140 287 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 16 285 - -
Cca07g02140 287 PRINTS Lambda-repressor HTH signature 121 130 IPR000047 GO:0003677
Cca07g02140 287 PRINTS Lambda-repressor HTH signature 130 146 IPR000047 GO:0003677
Cca07g02140 287 Pfam Homeobox associated leucine zipper 150 189 IPR003106 GO:0006355|GO:0043565
Cca07g02140 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 285 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02140 Cca-Chr7 49303510 49306303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02140 16 279 Homeobox Transcription Factor Family AT5G15150 49.658 5.33e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca07g02140 Homeodomain 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02140 K09338 - gmx:100797920 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02140 07 49303510 49306303 Cca07g02140 07 49303510 49306303 ECH
Cca09g00211 09 4484941 4488411 Cca07g02140 07 49303510 49306303 PCT