Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02139 ATGGGATGCAGCATTTTGTTTTTCACAAAATATTTTGATCTGCAAAGGATGCAGAATTTCTCTGTGACTGCCTTTATTGTTATTTATGGTATGGTTATTATGGAGATAGTATTGGAGTTAGAAGCCGCGCCTACAGCATCGCAGCTTCGATCGGAGGCAATTGCAATAAAAAATAGTGGATGGTGGAATCAACAGCAGCCAAAACCATACGATATATGTTTGTGGGATGGCATAGTTTGCAACAACGATGGAAGCATAACAGGAATCACGTATCCGTTTATAACAAAAGGAATTAGATTTGCAACACTTAACTTATCCGCTTTCAAGAATTTAGAAAGGCTAGAGGTCTGGGAAAGTGGACTAAACGAGACCATCCCACAAGAAATTGGTAATCTCCCAAAACTCACTCATCTAGATATGTCCTACAATAATCTTTATGGTGAGATACCTTCCTCACTAGGAAATCTTACCCAATTAAAGAGCCTAATCATCTCCACTACCAGCATTCAAGGCCCCATTCCTCATGAATTGTTCTTCCTGAAAAATCTTACTGTGTTAGATCTATCTTGCAACAGAATCAATGGGACCTTGCCCATTTCACTTACAAATCTCACTAAATTAGAAAGGCTTGACATTTCTCACAATCTACTAGTTGGTTCCCTAGAACCCTTTTCAGTTGGAAGCCATGCAACACTAACCACTATTGACATCAGTCACAACTTCATTAGTGGTGAAATACCGCCAGAGCTTGGATATGTCAACTACTTTCCATCCTTAGAAAGTTTGGATCTAAGCTATAATAATCTTACCGGGGCAGTTACTCTATTCAACAAACCTTTCTCTAATTTGAACATTTCATTCAATTATTTAAAGGGTCCCATTCCAGATAGTTTCCCTGCTTCTGCGCTCGTAGGCAACGAGGATCTTTGTAGCGACATATTATATACTCAAACCAACTTCCAATTCCAGCCTTGTTCAGCCAGTGGCAACAAGGTAAGACACAAACTGGTCATAGTTCTTCCTATCCTTATTTTTCTAATCTTGGCCTTCTTTCTGCTGATATATCTATGGTTCATTCACGTTAAAATTAAAAACAAACATGCAAATACAACCTCAGCAACTAAGAATGGGGATTTGTTCTGTATATGGAATTATGATGGAAGCATAGCCTATGAAGACATCATTAGAGCAACCCAAGACTTTGACCTGAAATATTGTATTGGGACAGGAGCTTATGGGAGTGTTTATAAGGCACAATTACCTAATGGAAAGGTTGTTGCCTTGAAAAAACTTCATGGCTTTGAAGCAGAGGTGCCGGCTTTTGATGAGAGTTTCAGAAATGAAGTCAAAGTATTATTAGAAATAAAGCATCGACATATCGTGAAGCTCTTTGGATTTTGCTTGCACAGAAGAATCATGTTTTTGATCTATGAGTACATGGAAAAAGGAAGCTTGTTTTCAGTCCTGTATGATGATGTAGAAGCAATGGAATTGGATTGGAAAAAGAGGATTAACATAGTGAAAGGCACTGCACATGCTCTTTCATATCTTCATCATGATTGCACTCCTCCTATTGTTCACAGAGATATATCAGCCAGCAATGTATTGCTTAACTCAGAGTGGGAGCCTATTGTTGGTGACTTTGGCACAGCCAGACTCCTCCAACGTGACTCATCCAATAGAACTATAGCTGCTGGAACCATTGGATATATAGCTCCTGAACTTGCCTATACAATGGTCGTGAATGAAAAATGTGATGTTTTTAGTTTCGGAGTAGTGACACTTGAAATTTTGGTGGGGAAACATCCTAAGGAAATCCTGTCATCACTCCAATCAGCATCAACTCGTATCATCACATTATATGAACTATTGGATCGGCGCCTCCCATCACCAAATATTGAAGTTTCACTAGACATAGTTCGTGTTGCTATGATAGCATTTGCATGCTTGAATCCCAATCCTTGTTCTCGTCCAACGATGAAACAAGTGTCTCAATGTTTTTTGAGTCAGCCAACTCCATTACTCATTCCTTTGCATGAAATTTCGTTGCAGCAGCTCGTGAGACAAGAACTCCAATCATCTGGAATTGTCAACTCCGCGTAG 2103 0.3928 MGCSILFFTKYFDLQRMQNFSVTAFIVIYGMVIMEIVLELEAAPTASQLRSEAIAIKNSGWWNQQQPKPYDICLWDGIVCNNDGSITGITYPFITKGIRFATLNLSAFKNLERLEVWESGLNETIPQEIGNLPKLTHLDMSYNNLYGEIPSSLGNLTQLKSLIISTTSIQGPIPHELFFLKNLTVLDLSCNRINGTLPISLTNLTKLERLDISHNLLVGSLEPFSVGSHATLTTIDISHNFISGEIPPELGYVNYFPSLESLDLSYNNLTGAVTLFNKPFSNLNISFNYLKGPIPDSFPASALVGNEDLCSDILYTQTNFQFQPCSASGNKVRHKLVIVLPILIFLILAFFLLIYLWFIHVKIKNKHANTTSATKNGDLFCIWNYDGSIAYEDIIRATQDFDLKYCIGTGAYGSVYKAQLPNGKVVALKKLHGFEAEVPAFDESFRNEVKVLLEIKHRHIVKLFGFCLHRRIMFLIYEYMEKGSLFSVLYDDVEAMELDWKKRINIVKGTAHALSYLHHDCTPPIVHRDISASNVLLNSEWEPIVGDFGTARLLQRDSSNRTIAAGTIGYIAPELAYTMVVNEKCDVFSFGVVTLEILVGKHPKEILSSLQSASTRIITLYELLDRRLPSPNIEVSLDIVRVAMIAFACLNPNPCSRPTMKQVSQCFLSQPTPLLIPLHEISLQQLVRQELQSSGIVNSA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02139 700 Pfam Leucine Rich Repeat 134 156 IPR001611 GO:0005515
Cca07g02139 700 SUPERFAMILY L domain-like 102 298 - -
Cca07g02139 700 SMART LRR_typ_2 180 203 IPR003591 -
Cca07g02139 700 SMART LRR_typ_2 256 278 IPR003591 -
Cca07g02139 700 SMART LRR_typ_2 204 228 IPR003591 -
Cca07g02139 700 SMART LRR_typ_2 132 156 IPR003591 -
Cca07g02139 700 SMART LRR_sd22_2 132 158 - -
Cca07g02139 700 SMART LRR_sd22_2 204 226 - -
Cca07g02139 700 SMART LRR_sd22_2 180 203 - -
Cca07g02139 700 SMART LRR_sd22_2 229 264 - -
Cca07g02139 700 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Cca07g02139 700 Gene3D Phosphorylase Kinase; domain 1 361 479 - -
Cca07g02139 700 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Cca07g02139 700 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 45 150 - -
Cca07g02139 700 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 138 208 - -
Cca07g02139 700 Pfam Protein kinase domain 406 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02139 700 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 197 693 - -
Cca07g02139 700 Gene3D Ribonuclease Inhibitor 45 316 IPR032675 -
Cca07g02139 700 Gene3D Transferase(Phosphotransferase) domain 1 480 671 - -
Cca07g02139 700 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Cca07g02139 700 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 45 150 - -
Cca07g02139 700 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 138 208 - -
Cca07g02139 700 ProSiteProfiles Protein kinase domain profile. 401 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02139 700 Pfam Leucine Rich repeat 257 271 IPR001611 GO:0005515
Cca07g02139 700 SUPERFAMILY Protein kinase-like (PK-like) 382 666 IPR011009 -
Cca07g02139 700 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 197 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02139 Cca-Chr7 49297290 49299546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02139 125 599 Receptor kinase-like Gene Family AT4G08850 41.379 5.46e-112 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca07g02139 Pkinase 7.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02139 - - gmx:102661105 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02139 07 49297290 49299546 Cca07g02139 07 49297290 49299546 ECH