Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02138 ATGCAGTTTTTTGTTTCTAATTTCCATGGCCCCACTTTTGTCATGTGTGGTATGGTTATTATGGGGATTGTATTGGAGATAGAAGCTGGATCTGCACCACTGCAGCTTCAATTGGAATCAAATGCTATAATCAATAGTAGATGGTGGAATGGGTCGAAGTCAAATCCAAAGAATATCTGTTCGTGGGAGGGTATCGTTTGCAACAAAGCTGGAAGTGTAACTAGAATCGGATATCCGTGTTATGATGCAGGGATTCAATTTGCAACACTAAACCTATCTGTTTTCATGAATTTGGAAAGGCTAGAGGTTGTCAACTGTAGACTAACAGGGACTATTCCACCTGAAATTGGTAATCTCCCCAAACTCACTCATCTTCAATTGTCCTCCAATTCTCTTCACGGTGAGATACCTCATTCACTGGGAAATCTTACCCAATTAGAGAGTCTAATCATCTTTGACACCAACATTCAAGGATCCATTCCTCAAGAATTGTTTTTGCTGAAAAATCTTGCTGTATTGGATCTATCTCTCAATCAAATCAATGGGACATTGCCCATTTCACTTACAAATCTCACAAAACTAGAAGAGCTTGACATTTCTTGGAATCTCCTCAGTGGTTCCCTAACCTCTATCATCCCTAATTACCACCAGAGCTTGCATATCCAATCCGAAATTGGAAATCTTCCTAGACTCACCCATCTCGACTTTTCTGGCAATGCTTTTTATGGTAAGATACCTCCTTCACTTGGAAATCTTACCCAATTAGAGAGCCTAGCCATCTCTTACAACAAAATCGAAGGTTTCATTCCTCGTGAAGTGGTGTTCCTGAAAAATCTTACTGTCTTAGATCTATCTCACAACAGAATCTATGGGAACTTGCCCATTTCACTGACAAATCTTACCCGATTAGAGAGCCTAATCATCTCTAACAACCAGATTCAAACTTCCATTCCTCGTGAACTGGAGTTCCTGAAAAATCTCAATGACTTAGATTTATCTTTCAACAAAATCAATGGGAGCTTGCCCATCTCACTGACAAATCTTACCCGATTAGAGAGACTACTCATCTCTAACAACGAGATTCAAGGCACCATTCCCCGTGGAATGATGTTCCTGAAAAATCTTACTGTCTTAGATATTTCTCATAACAGAATCAATGGGACCTTGCCCATTTCACTCATAAATCTTACAAAATTACAATTTCTTGACATATCTCACAATCTACTTGTTGGTTCTCTAAAATCCTTGTTAGTCGGGAGCCATGCACAGCTAACTAGTCACAACCTCAGTCACCAACTCACTTATATTGATTTGTCTTACAATTCTCTTGATGGTGAGATACCTCCTTCAATGGGAAACCTTACCCAATTAGAGAGGCTAATCATCTCTAACAACGACATTCAAGGTTCCATTCCTCGTGAGTTGGTGTTGCTAAAGAGTCTTACTTCTTTAAATCTATCACACAACAGAATCAGTGGGACCTTGCCCACTTCACTTGCAAAACTCACAAAATTAGAAATGCTTGACATTTCCCACAATCAACTCAGTGGTTCCCTAAATCCCTTATTGTTAGGTGGAAGCCCAGCACAACTTATCATTATTTACCTCAGTCGCAACCTCATTAGTGGTGAAATACCAACAGAGCTTGCAGACTTGCCAGCATTAAAAGGACTGAATCTAAGCTATAATAATCTTACCGGAACGGTTCCTCAATCTCTGCAATATGTCATTCATGTGGACATTTCCTATAATTATTTGAAGGGTCTCATTCCAGATGGTGTCCCTCCTGATGCACTAGTAGGTAACAAGGGCATATGTAGTGACATTTTGGATATCCAAACCAAATTCCAATTCCAGCCTTGTTCAACTCGCGGCAACAAAGTAATCATGGCCCGTGGCAACAAAGTAAGGCTCAAACTTGTCATAATTATTTTTGTCCCCATTCTTCTAATCATGGCCCTTTTACTACTTGTGTATCTAAGATTTATTCGAGTTCCAATTAACAACAAACATGCAAAGACAACGATGACTAAGAATGTGGACTTGTTTTGTATATGGAACTTTGATGGAAGCATAGCCTATGAAGACATCATCAGAGTAACAGAAGACTTTGACATGAAATATTGTATTGGAACAGGTGCCTATGGGAGTGTTTATAAGGCACAATTATCAAGTGGCAAGATTGTTGCCCTAAAAAAACTTCATGGCTTTGAAGCAGAGATACCAGCTTTTGATGAGAGTTTCAAAAATGAAGTCAAAGTATTATCGGAAATAAAGCACCGACATGTGGTGAAGCTTTACGGATTCTGTTTGCACAAAAAAATCATGTTTTTGATCTATGAGTACATGGAGAAAGGAAGCTTGTTTTCTGTCCTTTATGATGATGTGGAAGCAATGGAATTGGATTGGAAAAAGAGGGTTAACATAATGAAAGGCACTGCACATGCTCTGTCATATCTTCATCATGACTGCACTCCTCCAGTAGTGCATAGAGACATATCAGCCAGCAATGTCTTAATTAACTCAAAGTGGGAGCCCAGTGTTGGTGACTTTGGCACAGCCCGATTCCTTAGCCTTGATTCATCCAATAGAACTATAGTTGCTGGAACCATCGGATATATAGCTCCAGAGCTTGCATATAGTATGGTTGTGAGTGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGGCCCTTGAAATATTGGTGGGAAGGCATCCTAAAGAAATTCTGTTGTCACTTGACTCAGCTTCTAATGATCATGGCATCACATTATGTGAAGTATTAGACCAACGCCTCTCACAGCCAACAATGTCAGTTTTACTAGACATAGTTCATCTTGCCATTGTTGCATTTGCATGTTTAAATCCCAATCCTTCCTCTCGCCCAACAATGAAATGTGTTTCTCAATGTTTTCTTACTCAACTCATACCATTAAGCATTCCCTTGCGTGAAATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAGGCACTATTTAAAATTGTGA 3006 0.3955 MQFFVSNFHGPTFVMCGMVIMGIVLEIEAGSAPLQLQLESNAIINSRWWNGSKSNPKNICSWEGIVCNKAGSVTRIGYPCYDAGIQFATLNLSVFMNLERLEVVNCRLTGTIPPEIGNLPKLTHLQLSSNSLHGEIPHSLGNLTQLESLIIFDTNIQGSIPQELFLLKNLAVLDLSLNQINGTLPISLTNLTKLEELDISWNLLSGSLTSIIPNYHQSLHIQSEIGNLPRLTHLDFSGNAFYGKIPPSLGNLTQLESLAISYNKIEGFIPREVVFLKNLTVLDLSHNRIYGNLPISLTNLTRLESLIISNNQIQTSIPRELEFLKNLNDLDLSFNKINGSLPISLTNLTRLERLLISNNEIQGTIPRGMMFLKNLTVLDISHNRINGTLPISLINLTKLQFLDISHNLLVGSLKSLLVGSHAQLTSHNLSHQLTYIDLSYNSLDGEIPPSMGNLTQLERLIISNNDIQGSIPRELVLLKSLTSLNLSHNRISGTLPTSLAKLTKLEMLDISHNQLSGSLNPLLLGGSPAQLIIIYLSRNLISGEIPTELADLPALKGLNLSYNNLTGTVPQSLQYVIHVDISYNYLKGLIPDGVPPDALVGNKGICSDILDIQTKFQFQPCSTRGNKVIMARGNKVRLKLVIIIFVPILLIMALLLLVYLRFIRVPINNKHAKTTMTKNVDLFCIWNFDGSIAYEDIIRVTEDFDMKYCIGTGAYGSVYKAQLSSGKIVALKKLHGFEAEIPAFDESFKNEVKVLSEIKHRHVVKLYGFCLHKKIMFLIYEYMEKGSLFSVLYDDVEAMELDWKKRVNIMKGTAHALSYLHHDCTPPVVHRDISASNVLINSKWEPSVGDFGTARFLSLDSSNRTIVAGTIGYIAPELAYSMVVSEKCDVYSFGVVALEILVGRHPKEILLSLDSASNDHGITLCEVLDQRLSQPTMSVLLDIVHLAIVAFACLNPNPSSRPTMKCVSQCFLTQLIPLSIPLREISLQQLMSQELRHYLKL 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02138 1001 Gene3D Transferase(Phosphotransferase) domain 1 783 975 - -
Cca07g02138 1001 Pfam Protein kinase domain 709 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02138 1001 Gene3D Ribonuclease Inhibitor 217 269 IPR032675 -
Cca07g02138 1001 ProSiteProfiles Leucine-rich repeat profile. 278 301 IPR001611 GO:0005515
Cca07g02138 1001 SUPERFAMILY Protein kinase-like (PK-like) 683 970 IPR011009 -
Cca07g02138 1001 SMART LRR_typ_2 454 477 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 324 348 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 276 299 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 119 143 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 502 526 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 552 575 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 167 190 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 478 501 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 300 323 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 372 396 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 191 214 IPR003591 -
Cca07g02138 1001 SMART LRR_typ_2 228 252 IPR003591 -
Cca07g02138 1001 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 296 432 - -
Cca07g02138 1001 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 394 506 - -
Cca07g02138 1001 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 121 208 - -
Cca07g02138 1001 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 186 305 - -
Cca07g02138 1001 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 489 997 - -
Cca07g02138 1001 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 35 151 - -
Cca07g02138 1001 Gene3D Phosphorylase Kinase; domain 1 667 782 - -
Cca07g02138 1001 Gene3D Ribonuclease Inhibitor 525 615 IPR032675 -
Cca07g02138 1001 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515
Cca07g02138 1001 SMART LRR_sd22_2 478 501 - -
Cca07g02138 1001 SMART LRR_sd22_2 167 190 - -
Cca07g02138 1001 SMART LRR_sd22_2 324 350 - -
Cca07g02138 1001 SMART LRR_sd22_2 430 456 - -
Cca07g02138 1001 SMART LRR_sd22_2 300 323 - -
Cca07g02138 1001 SMART LRR_sd22_2 372 398 - -
Cca07g02138 1001 SMART LRR_sd22_2 191 217 - -
Cca07g02138 1001 SMART LRR_sd22_2 276 295 - -
Cca07g02138 1001 SMART LRR_sd22_2 502 517 - -
Cca07g02138 1001 SMART LRR_sd22_2 119 145 - -
Cca07g02138 1001 SMART LRR_sd22_2 252 273 - -
Cca07g02138 1001 SUPERFAMILY L domain-like 60 423 - -
Cca07g02138 1001 ProSitePatterns Tyrosine protein kinases specific active-site signature. 828 840 IPR008266 GO:0004672|GO:0006468
Cca07g02138 1001 PRINTS Leucine-rich repeat signature 481 494 - -
Cca07g02138 1001 PRINTS Leucine-rich repeat signature 502 515 - -
Cca07g02138 1001 Gene3D Ribonuclease Inhibitor 270 524 IPR032675 -
Cca07g02138 1001 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 489 997 - -
Cca07g02138 1001 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 296 432 - -
Cca07g02138 1001 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 394 506 - -
Cca07g02138 1001 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 121 208 - -
Cca07g02138 1001 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 186 305 - -
Cca07g02138 1001 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 35 151 - -
Cca07g02138 1001 ProSiteProfiles Leucine-rich repeat profile. 302 325 IPR001611 GO:0005515
Cca07g02138 1001 ProSitePatterns Protein kinases ATP-binding region signature. 710 732 IPR017441 GO:0005524
Cca07g02138 1001 Gene3D Ribonuclease Inhibitor 34 216 IPR032675 -
Cca07g02138 1001 Pfam Leucine rich repeat 478 515 IPR001611 GO:0005515
Cca07g02138 1001 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Cca07g02138 1001 Pfam Leucine rich repeat 350 409 IPR001611 GO:0005515
Cca07g02138 1001 Pfam Leucine rich repeat 229 289 IPR001611 GO:0005515
Cca07g02138 1001 ProSiteProfiles Protein kinase domain profile. 704 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02138 1001 SUPERFAMILY L domain-like 372 591 - -
Cca07g02138 1001 ProSiteProfiles Leucine-rich repeat profile. 480 503 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02138 Cca-Chr7 49284139 49287507 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02138 46 902 Receptor kinase-like Gene Family AT4G08850 36.403 1.05e-164 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca07g02138 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02138 - - ccaj:109796569 1945.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02138 07 49284139 49287507 Cca07g02138 07 49284139 49287507 ECH