Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02129 ATGTCGAAAATGTCTAGTCCTAGTGGTTCTGAGATAGAAGAGAAGGGAATTACAAAGGATGATAAAGTCAAATCTTGCAAAACTGAGATGGGTGAGGTGAAGGAAGAAAACGAGAGATTGAAGATGATGTTAGAGCAAGTAGAAAAGGACTACCACTCCTTTCAACTACGTTTCTTTGACATCCTTCACAAAGACGTTTCAAAGGGTGTAGCTGATTCATCTACTGCATATGATGAAACTGAAGAGCCTCATGAGCTTGTGTCACTTTGCCTTGGAAGGAGTCCAAGGGAGCCTAAGAAGGAAGCAAGAATTGGAAACTCCAACAAACCACAAGAGAGAGATGTGGGAACCAACCTTACTCTTGGATTAGACTCCAAACATGTGTTGTCAAAGGTTGTGTCTGATTTGAGTCCAATGAGCTCAGAAGAACCTAAGGAAGTGGAAGCAAAGGGAACATTGTCAACAAATATTCAATCAACAAAAGTGATAAATGCGAATGGCGATGTTTCAGACCAAACGCCAGCTAAGAGAGCCAGGGTATCCGTGAGATCCAGATGTGATACTCCCACGATGAATGATGGGTGCCAATGGAGGAAATATGGACAGAAGGTAGCAAAGGGAAATCCATGTCCAAGAGCATACTATCGTTGTACAGTTGCACCAACATGCCCAGTCAGGAAGCAGGTGCAAAGGTGTGCTGAAGACTTGTCCATCTTAATCACCACCTATGAAGGAACCCACAACCATCCTCTTCCAGTCTCAGCCACAGCCATGGCTTCAACCACTTCTGCTGCTGCTTCCATGCTGTTGTCAGGTTCTTCAACATCTCACCATGCAGGTCACTTTTCTGCATCTTTTGGAAATTCTCCTGCCACACTAATCAATGGTCCGAGTTTCAGTCAACAATTTGATGAATCAAGAGCGAAACAAATCTTCTACCCACCAAATCATGCCTCACCACATCTGTTCCCAACAATCACTCTAGACCTAACTTCTCCATCTTCTTCCTCCGCATCAACTCAATTCCATCATTGCTTATCTTCAAACCCTAAATGTTCTCCAGCTAGTCTCAGCTTTTGTTCCCCACAGCATAACTCTATACCATCCATTTGGGGTTATGGCACAAGTACAACACCAATTGACAAACTACAAACAAGGCCAGTTATCGAGGGAAATCAATATTTCCAAGAAAATAACTTCTACCAACAATGCATAACGAACCAAACTGCTTCCAGAGAAGCTTTGACAGAAACAATAACCAAGGCAATCAGCACAGACCCAAGTCTTCGTTCAGTAATAGCTGCTGCAGTTACATCAATAGTGGCGCATGGATCAAACAGTGGGAAACAAGAGGGAGCAGAGAATGTTCTTGGTTCAGGGTTGAACTTAAAACTGGGGGAGCATCTTCAATTGGCTTCACACAATCCCTTGAACCAGAATGGGAAAGGATTCTTGACAGGCTACTTCAAAAATTTGTCCTCTACAAGTTCTGAGGCAGGAAACTTCATTCTTCTTAAACCACCATTGCCATTATCTTTCTCCAAGACTGACACAAAATCCAGATCAACCATTATGTTCCAGAAATGA 1587 0.4291 MSKMSSPSGSEIEEKGITKDDKVKSCKTEMGEVKEENERLKMMLEQVEKDYHSFQLRFFDILHKDVSKGVADSSTAYDETEEPHELVSLCLGRSPREPKKEARIGNSNKPQERDVGTNLTLGLDSKHVLSKVVSDLSPMSSEEPKEVEAKGTLSTNIQSTKVINANGDVSDQTPAKRARVSVRSRCDTPTMNDGCQWRKYGQKVAKGNPCPRAYYRCTVAPTCPVRKQVQRCAEDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSHHAGHFSASFGNSPATLINGPSFSQQFDESRAKQIFYPPNHASPHLFPTITLDLTSPSSSSASTQFHHCLSSNPKCSPASLSFCSPQHNSIPSIWGYGTSTTPIDKLQTRPVIEGNQYFQENNFYQQCITNQTASREALTETITKAISTDPSLRSVIAAAVTSIVAHGSNSGKQEGAENVLGSGLNLKLGEHLQLASHNPLNQNGKGFLTGYFKNLSSTSSEAGNFILLKPPLPLSFSKTDTKSRSTIMFQK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02129 528 SMART WRKY_cls 191 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g02129 528 Gene3D WRKY domain 176 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca07g02129 528 Coils Coil 23 57 - -
Cca07g02129 528 Pfam WRKY DNA -binding domain 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g02129 528 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 520 IPR044810 GO:0003700
Cca07g02129 528 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 22 520 - -
Cca07g02129 528 MobiDBLite consensus disorder prediction 94 108 - -
Cca07g02129 528 MobiDBLite consensus disorder prediction 13 34 - -
Cca07g02129 528 MobiDBLite consensus disorder prediction 73 117 - -
Cca07g02129 528 ProSiteProfiles WRKY domain profile. 186 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca07g02129 528 MobiDBLite consensus disorder prediction 1 34 - -
Cca07g02129 528 SUPERFAMILY WRKY DNA-binding domain 184 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02129 Cca-Chr7 49141645 49144930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02129 30 450 WRKY Transcription Factor Family AT5G15130 44.397 1.76e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca07g02129 WRKY 7.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02129 - - gmx:100780402 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02129 07 49141645 49144930 Cca03g00548 03 9296910 9301564 ECH
Cca07g02129 07 49141645 49144930 Cca11g01930 11 44650725 44655503 ECH
Cca07g02129 07 49141645 49144930 Cca07g02129 07 49141645 49144930 ECH
Cca07g02129 07 49141645 49144930 Cca09g00205 09 4300531 4303643 ECH
Cca06g00704 06 19209173 19216232 Cca07g02129 07 49141645 49144930 ECH