Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02121 ATGGCAATGATGAAAGAGAATATTGAAGTGAGTCTTGGGAGGAGCCAAATGTCCATGCCAGAAGGTGAGTTACAAGCAACACGTTGTGTCAAGAGACGGCGAAGAGAGGTTGCTGCAGCAGCAGCAACCAGTGGTAATGATAAACACCAGCAGAAGCTAACACAAGAAGTTGGTGAAAATTCTACTATAAGCACTACAAAGAGAAGCTCAAAATTTCGTGGTGTTAGCAGACATAGATGGACGGGTCGATTTGAAGCTCATTTGTGGGACAAACTCTCTTGGAACATAACACAAAAGAAGAAAGGGAAGCAAGTTTATCTTGGGGCTTATGATGAAGAGGAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACATCAACTTTCACCAATTTTCCGATATCAGATTACGAGAAAGAGATAGAAATAATGCAGACCATGACCAAAGAGGAGTATTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGGGGGGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGGATAGGAAGGGTATTTGGAAACAAATATCTCTACCTTGGAACCTACAGCACCCAAGAGGAAGCTGCACGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGATTCATGCTGTAACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCTTCGGGAGGAAGCACCCCAGAAGCAAAACTTGAATCACATGCAGTACTACTAGAGTCTCAAAAGGTGTCATCCCCATCTAGCTATGCTCTAACAGAAGAGTCAAAGTCTTTGGCCCTTTACAGCAGTTTTTTCAGTCCAGATTCTCTGAGTTCCCCTATAAGGCCTGGAAATTTTGGAAGCAAAACTTACCAATTCTCAAGCAATAAGTCATCTTCTCCCACTGCACTTAGCCTTCTTCTCCGCTCTTCGTTATTTAGAGAATTGGTTGAAAAGAATTCAATTGTATCTGGAGATGAAGGTGATGGCGAAGTCACAAAGGATCAACAACCACAAATAGCCAGTGATGATGAACTGGGTGGAATCTTTTATGATAACATTGGTGATATCCCATTTGTCTGTGATCCCAATAGATACAACTTGGAGTTGCAAGAAAGAGACCTGCACTCAATATTTTGA 1179 0.4207 MAMMKENIEVSLGRSQMSMPEGELQATRCVKRRRREVAAAAATSGNDKHQQKLTQEVGENSTISTTKRSSKFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIKWLKPSGGSTPEAKLESHAVLLESQKVSSPSSYALTEESKSLALYSSFFSPDSLSSPIRPGNFGSKTYQFSSNKSSSPTALSLLLRSSLFRELVEKNSIVSGDEGDGEVTKDQQPQIASDDELGGIFYDNIGDIPFVCDPNRYNLELQERDLHSIF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02121 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 378 - -
Cca07g02121 392 MobiDBLite consensus disorder prediction 44 70 - -
Cca07g02121 392 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 8 378 - -
Cca07g02121 392 MobiDBLite consensus disorder prediction 39 70 - -
Cca07g02121 392 SUPERFAMILY DNA-binding domain 172 233 IPR016177 GO:0003677
Cca07g02121 392 ProSiteProfiles AP2/ERF domain profile. 71 137 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 PRINTS Ethylene responsive element binding protein signature 213 233 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 SUPERFAMILY DNA-binding domain 70 139 IPR016177 GO:0003677
Cca07g02121 392 Pfam AP2 domain 70 129 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 Pfam AP2 domain 172 223 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 CDD AP2 70 139 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 SMART rav1_2 71 143 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 SMART rav1_2 173 237 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 ProSiteProfiles AP2/ERF domain profile. 173 231 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 CDD AP2 172 233 IPR001471 GO:0003700|GO:0006355
Cca07g02121 392 Gene3D AP2/ERF domain 172 233 IPR036955 GO:0003700|GO:0006355
Cca07g02121 392 Gene3D AP2/ERF domain 70 139 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02121 Cca-Chr7 49064528 49067418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02121 67 248 AP2-EREBP Transcription Factor Family AT5G57390 66.310 4.58e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca07g02121 AP2 6.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02121 - - gmx:100792612 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02121 07 49064528 49067418 Cca07g02121 07 49064528 49067418 ECH