Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02120 ATGGCAGGAGGTGCAAGTAAGGTCATGTTCATCTTGTTGGTTGCTTTTGCCGTTACTATTCCAAGCCTTGATGCGCGCATTGGTGAGTTTGATGAACATCTGAAACAACAATCTGAGGAGGCTCACGAAATCGCTCTCGAGTCCTACGTGCCCGACCCTATAAACGTTACAGTGGACCTCAATATGCACGTTCATAGGGCATTGATGGAGGAAGATGAAGCAAACAACACAAGGAGGGAACTAAAGGAGAAATACCGTGGGCCATGCATGGCGCTGAACCCAATCGATCGTTGTTGGAGGTGCAAGAAAAAGTGGGACAAAAACCGGTTCAAGTTGGCGAAATGCGCCAAGGGTTTCGGAAGAAGGGCGGTGGGAGGACTCGGCGGGAAGATCTACACCGTGACGGACCCCTCCGACGACGACATGGTGGAGCCGAAACGCGGGACTCTCCGTTACGGCGCCATCCAAAAGGGACCACTGTGGATCGTGTTCGCGCGAAGCATGGTCATAACACTGAAGCAGGAGCTGTTGGTCACCTCCGACAAAACCATCGACGGTCGCGGCGCCCATGTTTCCATCAAGGACGGCGCTGGCATCTCCTTGCAGTTTGTGAACAACGTCATCATTCATGGCCTCCACATCCACCATATCAAGGCCAAGGAAGGTGGCATGATTAGGGACTCGTGGAACCACGTCGGAATCAGAACCAAGAGCGACGGTGACGCCGTCTCCGTTTTTGGCTCTTCCAACATTTGGCTCGATCATCTTTCTTTGTCTGACTGCGAGGATGGTCTCATCGACGTCATCGCCGCTTCCACCGCCGTCACCATCTCAAATTGTCACATGACCAAACACAACGATGTGATGCTGTTTGGAGCTAGCGATACCTTCTCTGAGGACAAGATAATGCAGATAACAGTGGCATTCAACCATTTTGGGCAGGGACTGATCCAAAGAATGCCGAGATGCAGATTTGGTTTCTTCCATGTGCTGAACAACGACTACACTCACTGGCTGATGTATGCAATTGGAGGGAGTTCAGGGCCAACGATTCTGAGCCAGGGAAACCGCTTCATTGCACCCAACAATGATGCTGCCAAGGAAATAACACACAGGGACTATGCACCCCCTGATGTGTGGAGCAAGTGGCAATGGAGATCAGAGAATGATCTCTTCATGAATGGTGCTACGTTCACTGAGTCAGGATCACCTATTGGGAAACTACCATTCAACAAAGGGTTCCTAATGAAACCTAGACATGGCTCAGAAGCCAATAGGCTCGCACGCTTTTCTGGGGCCCTCAATTGCAAGGCTGGTAAGCCTTGCTAG 1329 0.5117 MAGGASKVMFILLVAFAVTIPSLDARIGEFDEHLKQQSEEAHEIALESYVPDPINVTVDLNMHVHRALMEEDEANNTRRELKEKYRGPCMALNPIDRCWRCKKKWDKNRFKLAKCAKGFGRRAVGGLGGKIYTVTDPSDDDMVEPKRGTLRYGAIQKGPLWIVFARSMVITLKQELLVTSDKTIDGRGAHVSIKDGAGISLQFVNNVIIHGLHIHHIKAKEGGMIRDSWNHVGIRTKSDGDAVSVFGSSNIWLDHLSLSDCEDGLIDVIAASTAVTISNCHMTKHNDVMLFGASDTFSEDKIMQITVAFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYAPPDVWSKWQWRSENDLFMNGATFTESGSPIGKLPFNKGFLMKPRHGSEANRLARFSGALNCKAGKPC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02120 442 PANTHER PECTATE LYASE 18-RELATED 5 442 IPR045032 GO:0030570
Cca07g02120 442 SUPERFAMILY Pectin lyase-like 93 430 IPR011050 -
Cca07g02120 442 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cca07g02120 442 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Cca07g02120 442 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cca07g02120 442 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Cca07g02120 442 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cca07g02120 442 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Cca07g02120 442 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Cca07g02120 442 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Cca07g02120 442 Coils Coil 64 84 - -
Cca07g02120 442 SMART amb_all 167 364 IPR002022 -
Cca07g02120 442 Pfam Pectate lyase, N terminus 27 81 IPR007524 GO:0030570
Cca07g02120 442 Pfam Pectate lyase 174 358 IPR002022 -
Cca07g02120 442 Gene3D - 92 435 IPR012334 -
Cca07g02120 442 PANTHER PECTATE LYASE 5 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02120 Cca-Chr7 49054634 49056832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02120 6 442 Polysaccharide Lyase AT5G15110 52.119 1.16e-177 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02120 K01728 - gmx:100780236 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02120 07 49054634 49056832 Cca03g00547 03 9261970 9264192 ECH
Cca07g02120 07 49054634 49056832 Cca07g02120 07 49054634 49056832 ECH
Cca07g02120 07 49054634 49056832 Cca09g00198 09 4097597 4100129 ECH