Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca07g02120 | ATGGCAGGAGGTGCAAGTAAGGTCATGTTCATCTTGTTGGTTGCTTTTGCCGTTACTATTCCAAGCCTTGATGCGCGCATTGGTGAGTTTGATGAACATCTGAAACAACAATCTGAGGAGGCTCACGAAATCGCTCTCGAGTCCTACGTGCCCGACCCTATAAACGTTACAGTGGACCTCAATATGCACGTTCATAGGGCATTGATGGAGGAAGATGAAGCAAACAACACAAGGAGGGAACTAAAGGAGAAATACCGTGGGCCATGCATGGCGCTGAACCCAATCGATCGTTGTTGGAGGTGCAAGAAAAAGTGGGACAAAAACCGGTTCAAGTTGGCGAAATGCGCCAAGGGTTTCGGAAGAAGGGCGGTGGGAGGACTCGGCGGGAAGATCTACACCGTGACGGACCCCTCCGACGACGACATGGTGGAGCCGAAACGCGGGACTCTCCGTTACGGCGCCATCCAAAAGGGACCACTGTGGATCGTGTTCGCGCGAAGCATGGTCATAACACTGAAGCAGGAGCTGTTGGTCACCTCCGACAAAACCATCGACGGTCGCGGCGCCCATGTTTCCATCAAGGACGGCGCTGGCATCTCCTTGCAGTTTGTGAACAACGTCATCATTCATGGCCTCCACATCCACCATATCAAGGCCAAGGAAGGTGGCATGATTAGGGACTCGTGGAACCACGTCGGAATCAGAACCAAGAGCGACGGTGACGCCGTCTCCGTTTTTGGCTCTTCCAACATTTGGCTCGATCATCTTTCTTTGTCTGACTGCGAGGATGGTCTCATCGACGTCATCGCCGCTTCCACCGCCGTCACCATCTCAAATTGTCACATGACCAAACACAACGATGTGATGCTGTTTGGAGCTAGCGATACCTTCTCTGAGGACAAGATAATGCAGATAACAGTGGCATTCAACCATTTTGGGCAGGGACTGATCCAAAGAATGCCGAGATGCAGATTTGGTTTCTTCCATGTGCTGAACAACGACTACACTCACTGGCTGATGTATGCAATTGGAGGGAGTTCAGGGCCAACGATTCTGAGCCAGGGAAACCGCTTCATTGCACCCAACAATGATGCTGCCAAGGAAATAACACACAGGGACTATGCACCCCCTGATGTGTGGAGCAAGTGGCAATGGAGATCAGAGAATGATCTCTTCATGAATGGTGCTACGTTCACTGAGTCAGGATCACCTATTGGGAAACTACCATTCAACAAAGGGTTCCTAATGAAACCTAGACATGGCTCAGAAGCCAATAGGCTCGCACGCTTTTCTGGGGCCCTCAATTGCAAGGCTGGTAAGCCTTGCTAG | 1329 | 0.5117 | MAGGASKVMFILLVAFAVTIPSLDARIGEFDEHLKQQSEEAHEIALESYVPDPINVTVDLNMHVHRALMEEDEANNTRRELKEKYRGPCMALNPIDRCWRCKKKWDKNRFKLAKCAKGFGRRAVGGLGGKIYTVTDPSDDDMVEPKRGTLRYGAIQKGPLWIVFARSMVITLKQELLVTSDKTIDGRGAHVSIKDGAGISLQFVNNVIIHGLHIHHIKAKEGGMIRDSWNHVGIRTKSDGDAVSVFGSSNIWLDHLSLSDCEDGLIDVIAASTAVTISNCHMTKHNDVMLFGASDTFSEDKIMQITVAFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYAPPDVWSKWQWRSENDLFMNGATFTESGSPIGKLPFNKGFLMKPRHGSEANRLARFSGALNCKAGKPC | 442 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca07g02120 | 442 | PANTHER | PECTATE LYASE 18-RELATED | 5 | 442 | IPR045032 | GO:0030570 | |
Cca07g02120 | 442 | SUPERFAMILY | Pectin lyase-like | 93 | 430 | IPR011050 | - | |
Cca07g02120 | 442 | PRINTS | Pollen allergen Amb family signature | 115 | 132 | IPR018082 | - | |
Cca07g02120 | 442 | PRINTS | Pollen allergen Amb family signature | 139 | 164 | IPR018082 | - | |
Cca07g02120 | 442 | PRINTS | Pollen allergen Amb family signature | 175 | 191 | IPR018082 | - | |
Cca07g02120 | 442 | PRINTS | Pollen allergen Amb family signature | 239 | 260 | IPR018082 | - | |
Cca07g02120 | 442 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
Cca07g02120 | 442 | PRINTS | Pollen allergen Amb family signature | 341 | 360 | IPR018082 | - | |
Cca07g02120 | 442 | PRINTS | Pollen allergen Amb family signature | 383 | 407 | IPR018082 | - | |
Cca07g02120 | 442 | PRINTS | Pollen allergen Amb family signature | 413 | 436 | IPR018082 | - | |
Cca07g02120 | 442 | Coils | Coil | 64 | 84 | - | - | |
Cca07g02120 | 442 | SMART | amb_all | 167 | 364 | IPR002022 | - | |
Cca07g02120 | 442 | Pfam | Pectate lyase, N terminus | 27 | 81 | IPR007524 | GO:0030570 | |
Cca07g02120 | 442 | Pfam | Pectate lyase | 174 | 358 | IPR002022 | - | |
Cca07g02120 | 442 | Gene3D | - | 92 | 435 | IPR012334 | - | |
Cca07g02120 | 442 | PANTHER | PECTATE LYASE | 5 | 442 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca07g02120 | Cca-Chr7 | 49054634 | 49056832 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca07g02120 | 6 | 442 | Polysaccharide Lyase | AT5G15110 | 52.119 | 1.16e-177 | 503 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca07g02120 | K01728 | - | gmx:100780236 | 727.243 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca07g02120 | 07 | 49054634 | 49056832 | Cca03g00547 | 03 | 9261970 | 9264192 | ECH | |
Cca07g02120 | 07 | 49054634 | 49056832 | Cca07g02120 | 07 | 49054634 | 49056832 | ECH | |
Cca07g02120 | 07 | 49054634 | 49056832 | Cca09g00198 | 09 | 4097597 | 4100129 | ECH |