Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02117 ATGGGGTTTAGGAATAATGCAATTCAGGCAGGGAGTTTGGATGTGGGAAAGTCAAAGATAAGGATGCAAAAGGATGGTGCTGAAAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGTACTAGTGCTCACAGTGTGGACAAAGCATCTTCATATGAGAAAAGCAAGAAGAAAACAAATGTTCCTCCGGGGTCCTCTACAACAACCAGTAATGCAGAAAGTGTCCCTTCTACTCCAAAATTCAGCGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCTACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTTTTCAAGGGTTGGATTGAGGAAAATGGAACTGCACCTGTGAAACCTGGTACTGGCCTTACTGTTGCAGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCCGAGTTAGACATTCTTGGTGACCTTGTTCATACAAATCTGGTTAAATTGATTGGTTACTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCACGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTATCTTTTCTCCATGAAGAAGCTCAGAGGCCTGTAATCTATCGTGATTTTAAGACATCTAATATTCTGTTAGATGCGGAATACAACGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACTTATGGTTATGCAGCTCCTGAGTATGTGATGACCGGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGGCGATCTATCGATAAGAATAGACCAAATGGGGAACACAATCTTGTGGAATGGGCAAGGCCTGTACTCGGGGACCGGAGGATGTTACTACGGATAATTGATCCTCGCCTCGAAGGTCACTTCTCTGTTAAAGGATCACAGAAGGCTGCCCAAGTGGCTGCTCAATGCCTCAGCCGTGACCCGAAATCCAGACCTATGATGAGTGAAGTTGTTCAAGCTTTGAAGCCTTTGCAAAACCTCAAGGATATGGCTATCTCATCATATCACTTCCAGGTTGCACGAGTAGATCGAACCATGTCCATGCCAAAAAATGGTATTCAAACACAGTTAACATCTTTATCAAGGAAGGGTCAACCTGTAAGGATCTTGTCTAGTCCAAAAGGTCCTCATGGTTCTCCATATCATCACAGTATCAAGTCACCAAAACCTAAAGGATAA 1425 0.4295 MGFRNNAIQAGSLDVGKSKIRMQKDGAEKEIGCCVKFCFIGSCIPSRSKVDNSISGTSAHSVDKASSYEKSKKKTNVPPGSSTTTSNAESVPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHTNLVKLIGYCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGSQKAAQVAAQCLSRDPKSRPMMSEVVQALKPLQNLKDMAISSYHFQVARVDRTMSMPKNGIQTQLTSLSRKGQPVRILSSPKGPHGSPYHHSIKSPKPKG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02117 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Cca07g02117 474 MobiDBLite consensus disorder prediction 61 95 - -
Cca07g02117 474 SUPERFAMILY Protein kinase-like (PK-like) 96 403 IPR011009 -
Cca07g02117 474 PANTHER OS01G0588500 PROTEIN-RELATED 57 466 - -
Cca07g02117 474 MobiDBLite consensus disorder prediction 72 95 - -
Cca07g02117 474 ProSiteProfiles Protein kinase domain profile. 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02117 474 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Cca07g02117 474 MobiDBLite consensus disorder prediction 440 474 - -
Cca07g02117 474 PANTHER RECEPTOR-LIKE KINASE PLANT 57 466 - -
Cca07g02117 474 CDD STKc_IRAK 128 406 - -
Cca07g02117 474 Gene3D Transferase(Phosphotransferase) domain 1 208 426 - -
Cca07g02117 474 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
Cca07g02117 474 Pfam Protein kinase domain 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02117 Cca-Chr7 49014888 49019338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02117 80 419 Glycoside Hydrolase AT3G07070 52.557 6.22e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca07g02117 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02117 - - gmx:100802866 920.998