Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02109 ATGCAGCATTTTGTTTCAGAATTTTATGGAACCAACTTTGTTGTTATTTATGGTATGCTTATTATGGGAATTGTGTTGGAGTTACTAGCCGCAGCTGCACCATCGCTGTCTCCATCAGAAGCAAAAGCCATACTCAATAGTGGATGGTGGAATCAATCGGAGATAAATGCATACTCTATTTGTTCCCAGATGGATGGTATAGTTTGCAATGAAGCTGGAAGCATAACTAGAATCAGAAATCCGGATTTTAAAGAAGGGAGTAATTTAGCAACACTAAACCTTTCTGCTTTCGAGAATTTAGAATGGCTAGAGGTATCGAACCGTGGACTACATGGAATTATCCCACCTGAAATTGGTAATCTATCAAAACTCACTCATCTAATCTTGTCCAGTAATTCTCTTCACGGGGAGATACCTCCTTCATTGGGAAATCTTTCCCAATTAGAGATCCTAAGCATCTCTAACAACAACATTCAAGGCTTCATTCCTCCTGAATTAGTGTCCTTGAAAAATCTCACTGTCCTTGATCTTTCTTTCAACAGAATCAATGGGACCTTGCCCATTTCACTTTCAAATCTCACAAAATTACAATCTCTTGACATTTCTAACAATCTACTTGTTGGTTCCCTACAATCCTTGTTGGTGGGAAGCCAAACGCAACTAACCACTACGAACTTCAGTCACATCCTTATTCATCTCGACCTGTCCAACAATTTTTTTCATGGGGGGATACCTCCTTCACTGGGAAGTCTTACCCAATTAGAGACCCTAATCATCTCTGGAAACAACCTTCAAGGTTCCATTGCCCCTGGGATCTTTCCCATTTCACTTTCAAAACTCACAAAATTAAAATCTCTTTACCTTTCCAACAATCAACTCATTGGTTCCCTACAACCCTTGTTAGTTGGAAGGCATGCACAACTAAGTTCTGTTGACCTCAGTCACAACCTCATTAGTGGGGAAATACCACCAAAGCTTGCATGTAATATGCCATCCTTAAAATATCTGGATCTAAGCTACAATAATCTTATTGGAACGGTTCCTCCAACTCTGCAAAGTGTCTCTTATGTGGACCTTTCCTTCAATAATTTGACGGGTCCCATTCCACAAGGTTTTACTGAGTTTCAGCTAATAGGGAACAAAGATGTATGTAGCAACAATCCGTATTACCAAACCAATTACCAATTCCAGCCTTGTGCAGCCCGTAACAACAAAGTAATTCACAAATGGGTCATAGTTTTTCCTATCCTCATTTTTCTAATCATAGCCTTACTACTTCTGTATCGGAGGTTTATTCGCAGCACAATAAAGATATCATCGATGGCTCAGAATGGGGATTTGTTCTGTATTTGGAACTATGACGGTAGAATAGCCTATCAAGACATCATAACAGCAACCGAAGATTTTGACATGAAATATTGTATTGGAACAGGAGCTTATGGGAGTGTTTACAAGGCACAATTACCAAGTGGCAAGGTTGTTGCCTTGAAAAAACTCCATAGTTTTGAAGCAGAGGTGTTGGCTTTTGAAGAGAGTTTTAAAAATGAGGTCAAAGTATTATCAGATATAAAACATCGACATATTGTGAAGCTCTATGGATATTGCTTGCACAGAAGAATCATGTTTTTGATCTATGAGTACATGGAGAAAGGAAGCTTGTTTTCTGTCTTGTATGATGATGTGGAAGCAATGGAATTGGATTGGAAAAAGAGGGTTAACATAGTAAAAGGAACTGCACATGCTCTCTCATATCTTCATCATGACTGCACTCCTCCAGTAGTGCATAGAGACATATCAGCCAGCAATGTGTTGCTTAACTCAGAGTGGGAGCCCAGTGTTGGTGACTTTGGCACAGCCCGATTCCTCAACCTTGATTCATCCAATCatgTTGCTGGAACCATTGGATATATAGCTCCTGAACTTGCCTATACAATGGTTGTGACTGAAAAATGTGATGTTTTTAGTTTCGGAGTAGTGGCACTTGAAACTTTGATGGGGAAACATCCTAAGGAAATACTGTCATCACTCCAATCAACATGTACTCATAGCATCACATTATATGAACTATTAGACCAGCGCCTCCCAGAGCCAAAAGTGGCATTTTCACTGGACATAGTTCGTGTTGCCATTATAGCATTTTCATGCTTGAATCCCAATCCTTGTTCTCGCCCAACAATGAAACAAGTGTCTCAATGTTTTTTGACTCAACCAGCTCCATTACTCATTCCTTTACATGAAATTTCGTTGCGTCAGCTCATTAGACAAGAACTCGAATTATCTAAAATTGTCAACTCCTCATAG 2301 0.395 MQHFVSEFYGTNFVVIYGMLIMGIVLELLAAAAPSLSPSEAKAILNSGWWNQSEINAYSICSQMDGIVCNEAGSITRIRNPDFKEGSNLATLNLSAFENLEWLEVSNRGLHGIIPPEIGNLSKLTHLILSSNSLHGEIPPSLGNLSQLEILSISNNNIQGFIPPELVSLKNLTVLDLSFNRINGTLPISLSNLTKLQSLDISNNLLVGSLQSLLVGSQTQLTTTNFSHILIHLDLSNNFFHGGIPPSLGSLTQLETLIISGNNLQGSIAPGIFPISLSKLTKLKSLYLSNNQLIGSLQPLLVGRHAQLSSVDLSHNLISGEIPPKLACNMPSLKYLDLSYNNLIGTVPPTLQSVSYVDLSFNNLTGPIPQGFTEFQLIGNKDVCSNNPYYQTNYQFQPCAARNNKVIHKWVIVFPILIFLIIALLLLYRRFIRSTIKISSMAQNGDLFCIWNYDGRIAYQDIITATEDFDMKYCIGTGAYGSVYKAQLPSGKVVALKKLHSFEAEVLAFEESFKNEVKVLSDIKHRHIVKLYGYCLHRRIMFLIYEYMEKGSLFSVLYDDVEAMELDWKKRVNIVKGTAHALSYLHHDCTPPVVHRDISASNVLLNSEWEPSVGDFGTARFLNLDSSNHVAGTIGYIAPELAYTMVVTEKCDVFSFGVVALETLMGKHPKEILSSLQSTCTHSITLYELLDQRLPEPKVAFSLDIVRVAIIAFSCLNPNPCSRPTMKQVSQCFLTQPAPLLIPLHEISLRQLIRQELELSKIVNSS 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02109 766 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 271 759 - -
Cca07g02109 766 Pfam Leucine rich repeat 282 343 IPR001611 GO:0005515
Cca07g02109 766 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Cca07g02109 766 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 124 268 - -
Cca07g02109 766 Gene3D Transferase(Phosphotransferase) domain 1 548 737 - -
Cca07g02109 766 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 271 759 - -
Cca07g02109 766 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 36 139 - -
Cca07g02109 766 Gene3D Phosphorylase Kinase; domain 1 435 547 - -
Cca07g02109 766 SMART LRR_sd22_2 280 299 - -
Cca07g02109 766 SMART LRR_sd22_2 121 147 - -
Cca07g02109 766 SMART LRR_sd22_2 193 215 - -
Cca07g02109 766 SMART LRR_sd22_2 169 192 - -
Cca07g02109 766 SMART LRR_sd22_2 330 359 - -
Cca07g02109 766 Pfam Protein kinase domain 474 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02109 766 ProSitePatterns Tyrosine protein kinases specific active-site signature. 593 605 IPR008266 GO:0004672|GO:0006468
Cca07g02109 766 ProSitePatterns Protein kinases ATP-binding region signature. 475 497 IPR017441 GO:0005524
Cca07g02109 766 ProSiteProfiles Protein kinase domain profile. 469 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02109 766 PRINTS Leucine-rich repeat signature 330 343 - -
Cca07g02109 766 PRINTS Leucine-rich repeat signature 172 185 - -
Cca07g02109 766 Pfam Leucine Rich Repeat 230 251 IPR001611 GO:0005515
Cca07g02109 766 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Cca07g02109 766 ProSiteProfiles Leucine-rich repeat profile. 282 301 IPR001611 GO:0005515
Cca07g02109 766 SUPERFAMILY Protein kinase-like (PK-like) 450 732 IPR011009 -
Cca07g02109 766 Gene3D Ribonuclease Inhibitor 50 393 IPR032675 -
Cca07g02109 766 SMART LRR_typ_2 280 304 IPR003591 -
Cca07g02109 766 SMART LRR_typ_2 169 192 IPR003591 -
Cca07g02109 766 SMART LRR_typ_2 330 353 IPR003591 -
Cca07g02109 766 SMART LRR_typ_2 251 275 IPR003591 -
Cca07g02109 766 SMART LRR_typ_2 193 216 IPR003591 -
Cca07g02109 766 SMART LRR_typ_2 121 145 IPR003591 -
Cca07g02109 766 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 36 139 - -
Cca07g02109 766 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 124 268 - -
Cca07g02109 766 SUPERFAMILY L domain-like 73 399 - -
Cca07g02109 766 ProSiteProfiles Leucine-rich repeat profile. 171 194 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02109 Cca-Chr7 48901351 48904262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02109 112 639 Receptor kinase-like Gene Family AT4G08850 39.130 3.11e-111 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca07g02109 Pkinase 9.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02109 - - gmx:102666504 877.47