Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02104 ATGGGTGAGAAAGATGAtggcttagggttgagtttgggtttgagtttgggAGTGAATCAACAACCTCCTCCTTTCAATCACATGCACAAACCTCAACAACTCCTTCCCATCAATCACAACAACATTTCCTTTGGTGATTTGTTTCACCTACCAGATCGGAGCTCCGACGTGGCGCGAGGAATCGACGTGAATTCTGCGGCGGAGTGCGACGAAGACAACGGTGTCTCGTCGCCGAACAGCGCGGTGTCGAGCGTGAGCGGCGGCAAGCGCGGCGAGAGGGAGGACGATAATGCcgccggcgtgggcggcgagaggacgtcgtgctcgcgtgggagcgacgacgacgaaggcggaggaagcggcggcgacggcggGAGGAAGAAGCTGAGGCTGACGAAGGAACAGGCTATGGTTTTGGAAGAAACGTTCAAGGAGCATAACACGCTGAATCCGAAAAGGAAGCAAGCGTTGGCAGAGAAGTTGAATCTGAAGCCTAGACAAGTAGAGGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAACAAACCGAAGTGGATTGTGAATACTTAAAGAGATACTGTGAGAATTTAACTGAAGAGAATAGAAGGATGCACAAAGAGCTCCAAGAACTTAGGGCACTGAAATTATCTCCACAAATGTACATGCATATGAACCCTCCCACCACTCTTACAATGTGCCCTTCTTGTGAGCGTGCTCACTCCTCTGCATCCTCCTCCTCTCCTGCCACTGGCCACTCGGCAACTGCACCAAACAATCGTAAATTGTTTGGTGCAAATATTCGACGGACAGCACCGGTTAGCACATGGCCATTTGAAGGTTCAGTCTCTCGACCATAA 861 0.4228 MGEKDDGLGLSLGLSLGVNQQPPPFNHMHKPQQLLPINHNNISFGDLFHLPDRSSDVARGIDVNSAAECDEDNGVSSPNSAVSSVSGGKRGEREDDNAAGVGGERTSCSRGSDDDEGGGSGGDGGRKKLRLTKEQAMVLEETFKEHNTLNPKRKQALAEKLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLTEENRRMHKELQELRALKLSPQMYMHMNPPTTLTMCPSCERAHSSASSSSPATGHSATAPNNRKLFGANIRRTAPVSTWPFEGSVSRP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02104 286 SUPERFAMILY Homeodomain-like 109 183 IPR009057 -
Cca07g02104 286 Pfam HD-ZIP protein N terminus 1 94 IPR006712 GO:0005634
Cca07g02104 286 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Cca07g02104 286 MobiDBLite consensus disorder prediction 68 128 - -
Cca07g02104 286 PANTHER - 5 278 - -
Cca07g02104 286 CDD homeodomain 126 183 IPR001356 GO:0003677
Cca07g02104 286 Gene3D - 109 185 - -
Cca07g02104 286 Coils Coil 195 215 - -
Cca07g02104 286 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Cca07g02104 286 MobiDBLite consensus disorder prediction 70 86 - -
Cca07g02104 286 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Cca07g02104 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 5 278 - -
Cca07g02104 286 MobiDBLite consensus disorder prediction 236 260 - -
Cca07g02104 286 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Cca07g02104 286 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Cca07g02104 286 MobiDBLite consensus disorder prediction 108 128 - -
Cca07g02104 286 SMART HOX_1 124 186 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02104 Cca-Chr7 48857658 48861807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02104 1 239 Homeobox Transcription Factor Family AT3G60390 58.363 2.22e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca07g02104 HD-ZIP_N 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02104 K09338 - gmx:100819624 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02104 07 48857658 48861807 Cca07g02104 07 48857658 48861807 ECH
Cca01g01602 01 36456603 36460596 Cca07g02104 07 48857658 48861807 PCT