Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02101 ATGAATCGTAGAGTAAGGAGGAAGGTGGCGAGGAAAAGCAAAGGGAATGTGGTGCAATCTAGTTTTCCTGAAGTTCAAGATGAGGTTTTAGATTTGGAACACCAAGGGCAAGAAGCTGTTGATTGGAAGCGCTTGCCTGATGATACAGTAATTCAGTTGTTGTCATGTTTGAGTTATCGAGATCGAGCTAGCTTGTCCTCAACTTGTAGGACATGGAGGACTCTTGGTAGCTCCCCGTGTTTGTGGACTTCTCTGGATCTCCGTTCTCACAGGTTTGATGCCAGCATGGCTTCATTGCTTGCACCCCGGTGTGAGCATCTTCAGAAGCTAAGGTTTCGGGGGGCAGAGTCTGCTGATGCAATAATTCATCTTCGAGCTAAGAAGTTGCGTGAGTTAAGTGGTGACTATTGCAGGAAGATTACTGATGCAACTCTTTCAGTGATTGTGGCTCGGCATGAGTCACTTGAGAGCCTTCAGCTTGGACCAGATTTCTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGTCCTAAATTGAATAAGCTTAGACTCTCGGGTATCAGGGACGTAAATGCTGATGCTATTAATGCTTTGGCTAAGCATTGTCCAAAGTTGACAGATATCGGGTTCATTGACTGTCTGAATGTTGATGAGGTTGCACTGGGAAATGTGTTATCAGTTCGTTTCCTTTCTGTTGCGGGGACATCAAGTATGAAGTGGGGTGTGGTTTCCCATCTCTGGCATAAACTTCCTAACCTGATTGGGCTAGATGTTTCAAGAACTGATATTGGTCCATCAGCTGTTTTCAGAATGTTGTCCTTATCTCAGAATTTGAGGGTTATGATTGCTCTGAATTGTCCTATCCTTGAAGAAGACACTAGCTTCTCTGCTAGTAAATATAAAAACAAGTTGTTAATTTCCCTTCGGACTGATATTTTTAAAGGACTGGCTTCTTTATTTTTTGACAATACAAAGAGAGGAAAAAATGTATTTTTGGACTGGAGGACCTCAAAGAATAATGATAAGGACCTTAATGAAATTATACCCTGGCTTGAGTGGATGCTATCCCATACACTTTTGCGCTCTGCCGAGAGTCCCCAACAAGGTCTTGATAATTTCTGGGTTGAACAAGGTGGAGCACTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAAAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGCGGAAGGGCTGAAGCAGTTATGCGAGACGGAGGCATACGCCTCCTACTTGGCCTGGCAAAATCATGGAGGGAAGGGCTTCAATCTGAGGCAGCTAAGGCCATTGCAAATTTGTCTGTCAATGCAAATGTGGCCAAAGCTGTGGCAGAAGAGGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCAATGAACAAGCTGGTAGCTGAAGAGGCTGCTGGAGGATTATGGAATCTCTCCGTTGGAGAAGAACACAAGGGTGCCATTGCTGAAGCTGGTGGAATAAAAGCATTAGTGGATCTTATATTCAAGTGGTCCTCTAGTGGAGATGGGGTTTTAGAACGTGCTGCTGGTGCATTGGCTAATTTGGCAGCCGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTACATGCTCTGGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGGGCATTGGCTAACTTAGCTGCTCATGGAGATAGTAACAGTAATAATGCTGCTGTTGGACAAGAAGCAGGTGCGCTTGAGGCTCTTGTTCAACTTACTCGTTCTCCCCACGAGGGTGTCAGGCAAGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGATGATAGAAATCGAGAGGCCATTGCTGCAGCTGGTGGGGTTCAGGCCTTGGTTGCCCTTGCCCAAACTTGTTCTAATGCCTCGCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTGTGGGGATTGTCAGTCTCGGAAACCAATAGCCTTGCCATTGGACGAGAAGGAGGTGTTGCACCTTTGATTGCACTGGCACGGTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGAGCACTATGGAATCTTGCTTTCAACCCCAGCAATGCTCTACGAATAGTTGAGGAAGGTGGAGTATCTGCCCTAGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTCATGGCTGCTTTGGCATTGGCTTACATGTTTGACGGAAGAATGGATGAATATGCTTTAGTAGGCTCCGCTTCTGAAAGTAGTTCTAAGAGTGTGAGCTTGGATGGTGCTAGGAGGATGGCTTTGAAACACATTGAAGCTTTTGTCCTTATGTTTTCTGATCCACAAGCATTTGCAGCTGCTGCTTCCTCATCTGCTCCTGCAGCATTAGCACAGGTTACTGAAGGTGCGCGTATTCAAGAAGCAGGACATCTGAGATGCAGTGGTGCTGAAATTGGAAGATTCATCACTATGTTACGAAATCCATCATCTATACTAAAGGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATTCCTGGTGGACGACATGCAACTCACCATGCTAGTCTCATGTTGAGCTTGGGAGCACCAAGAGTGCTGCGTGGCGCGGCCGCAGCAGCAACTGCCCCTCTTGAAGCAAAAATCTTTGCCAGAATTGTTCTTCGCAATCTTGAATATCACCAGACAGAGCATACAGTGTAG 2763 0.4582 MNRRVRRKVARKSKGNVVQSSFPEVQDEVLDLEHQGQEAVDWKRLPDDTVIQLLSCLSYRDRASLSSTCRTWRTLGSSPCLWTSLDLRSHRFDASMASLLAPRCEHLQKLRFRGAESADAIIHLRAKKLRELSGDYCRKITDATLSVIVARHESLESLQLGPDFCERISSDAIKAIAHCCPKLNKLRLSGIRDVNADAINALAKHCPKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVFRMLSLSQNLRVMIALNCPILEEDTSFSASKYKNKLLISLRTDIFKGLASLFFDNTKRGKNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQTCSNASPGLQERAAGALWGLSVSETNSLAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPSNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEYALVGSASESSSKSVSLDGARRMALKHIEAFVLMFSDPQAFAAAASSSAPAALAQVTEGARIQEAGHLRCSGAEIGRFITMLRNPSSILKACAAFALLQFTIPGGRHATHHASLMLSLGAPRVLRGAAAAATAPLEAKIFARIVLRNLEYHQTEHTV 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02101 920 Pfam F-box-like 42 88 IPR001810 GO:0005515
Cca07g02101 920 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 556 587 IPR000225 GO:0005515
Cca07g02101 920 Gene3D Ribonuclease Inhibitor 35 310 IPR032675 -
Cca07g02101 920 Gene3D - 592 768 IPR011989 -
Cca07g02101 920 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Cca07g02101 920 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 512 557 IPR000225 GO:0005515
Cca07g02101 920 SUPERFAMILY RNI-like 44 295 - -
Cca07g02101 920 Gene3D - 349 519 IPR011989 -
Cca07g02101 920 PANTHER PROTEIN ARABIDILLO 1 1 906 IPR044583 -
Cca07g02101 920 SUPERFAMILY ARM repeat 367 746 IPR016024 -
Cca07g02101 920 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 643 688 IPR000225 GO:0005515
Cca07g02101 920 SMART LRR_CC_2 126 151 IPR006553 -
Cca07g02101 920 SMART LRR_CC_2 180 205 IPR006553 -
Cca07g02101 920 SMART LRR_CC_2 206 231 IPR006553 -
Cca07g02101 920 SMART LRR_CC_2 152 179 IPR006553 -
Cca07g02101 920 SMART fbox_2 45 85 IPR001810 GO:0005515
Cca07g02101 920 Gene3D - 520 591 IPR011989 -
Cca07g02101 920 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 687 729 IPR000225 GO:0005515
Cca07g02101 920 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Cca07g02101 920 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515
Cca07g02101 920 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 602 644 IPR000225 GO:0005515
Cca07g02101 920 SMART arm_5 632 675 IPR000225 GO:0005515
Cca07g02101 920 SMART arm_5 676 716 IPR000225 GO:0005515
Cca07g02101 920 SMART arm_5 591 631 IPR000225 GO:0005515
Cca07g02101 920 SMART arm_5 501 544 IPR000225 GO:0005515
Cca07g02101 920 SMART arm_5 419 459 IPR000225 GO:0005515
Cca07g02101 920 SMART arm_5 545 586 IPR000225 GO:0005515
Cca07g02101 920 SMART arm_5 717 758 IPR000225 GO:0005515
Cca07g02101 920 SMART arm_5 460 500 IPR000225 GO:0005515
Cca07g02101 920 Pfam Armadillo/beta-catenin-like repeat 502 544 IPR000225 GO:0005515
Cca07g02101 920 Pfam Armadillo/beta-catenin-like repeat 632 674 IPR000225 GO:0005515
Cca07g02101 920 Pfam Armadillo/beta-catenin-like repeat 555 586 IPR000225 GO:0005515
Cca07g02101 920 Pfam Armadillo/beta-catenin-like repeat 679 715 IPR000225 GO:0005515
Cca07g02101 920 Pfam Armadillo/beta-catenin-like repeat 465 499 IPR000225 GO:0005515
Cca07g02101 920 Pfam Armadillo/beta-catenin-like repeat 594 630 IPR000225 GO:0005515
Cca07g02101 920 Pfam Armadillo/beta-catenin-like repeat 424 458 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02101 573 760 U-box Gene Family AT2G23140 35.450 6.40e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02101 - - ccaj:109792060 1687.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02101 07 48800955 48817374 Cca07g02101 07 48800955 48817374 ECH