Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02092 ATGTCATCCACCACCACGGCTTCAGAGTGTTCATATTTAGATCAAATTCAACAATACCTCCTTCCCAATGATTCAGGCATTCTAACACCAAATCAAGCTTTTCCAAGCCCTAGACATAATACTGGTTCTGACACGGCAGTGCGTGAAGCGAACGCGCCTCCAAAATGGAGGCGCTACCGGGGTGTGAGGCGTAGGCCATGGGGAAAGTTCGCGGCGGAGATAAGAGATCCAAAGAAAAATGGTGCTAGGATTTGGCTCGGAACTTATGTAACCGAGGAAGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCGCAAGGCCAAGTTGAATTTTCCTCACCTCATTGGCTCCGATGATACGTCATCAAAGGTGCCAAGTGTGGTGGCTTCTAAGTGGAGTTTGCCGGAGCCTTCTTCACCATCATCATTGGATGATAGTTGTGAATCACAAGGGTCAAAGAGAAGAAAGAGCTTGGTTAATCTATTGAATAACTTGGCCAAGGATAGAAGTCGTCACTTCATTGGCTTCGATGATACGTCATCAAAGTCACTGAGCGTGGTAACTTCTAAGCAGAGTTTGTCAAAGCCTTCTTCACTATCATCTTTGGATGATAGTTGTGAATCACAATGGTCAAAGAGAAGAAAGAGCTCGGTTAATCTATTGAATAACTTGGCCAAGGATAGAAGCCAAGTCAAGGTGGTTGAAATGGCCTTAGAGACAAATGAGGTTGAGAAATGGGTGAATGAATTGAGTGATTGCACTCTAATCTGGTGCTCCTAG 792 0.452 MSSTTTASECSYLDQIQQYLLPNDSGILTPNQAFPSPRHNTGSDTAVREANAPPKWRRYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYVTEEEAALAYDKAAFKMRGRKAKLNFPHLIGSDDTSSKVPSVVASKWSLPEPSSPSSLDDSCESQGSKRRKSLVNLLNNLAKDRSRHFIGFDDTSSKSLSVVTSKQSLSKPSSLSSLDDSCESQWSKRRKSSVNLLNNLAKDRSQVKVVEMALETNEVEKWVNELSDCTLIWCS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02092 263 CDD AP2 66 118 IPR001471 GO:0003700|GO:0006355
Cca07g02092 263 MobiDBLite consensus disorder prediction 135 155 - -
Cca07g02092 263 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Cca07g02092 263 PANTHER DNA-BINDING DOMAIN 188 234 IPR044808 GO:0003700|GO:0009873
Cca07g02092 263 PANTHER DNA-BINDING DOMAIN 1 175 IPR044808 GO:0003700|GO:0009873
Cca07g02092 263 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Cca07g02092 263 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Cca07g02092 263 PRINTS Ethylene responsive element binding protein signature 98 118 IPR001471 GO:0003700|GO:0006355
Cca07g02092 263 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Cca07g02092 263 Gene3D AP2/ERF domain 57 117 IPR036955 GO:0003700|GO:0006355
Cca07g02092 263 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Cca07g02092 263 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 175 - -
Cca07g02092 263 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 188 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02092 Cca-Chr7 48706245 48707267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02092 45 121 AP2-EREBP Transcription Factor Family AT2G44840 67.416 4.24e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca07g02092 AP2 4.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02092 K09286 - gmx:102663872 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01589 01 35779836 35780754 Cca07g02092 07 48706245 48707267 PCT