Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02091 ATGGCTTCCGCTACCATGGATAATTCCGATCTTGCGTTCTTGGAATCAGTTCAACAATACCTACTTGGACATGATTCCACCGATCTCATCCATGTTTCAAAACCTGAAACCCACGGATTTTCATCCCATGATCCACCTTCAAGCCCTAAGTGTGAAGTTGATTCGGATCGCAATGAAGAAGCTTCGGCTGTGGTGGCGCGTCAGCATCACGCGCCACCAACATGGAAGCATTATAGAGGAGTGAGGCGTAGGCCATGGGGAAAGTTCGCGGCGGAGATTAGGGATTCAAAGAAGAATGGAGCTAGGGTTTGGCTTGGAACTTATGATACCGAAGAAAAAGCGGCTTTGGCATATGACAAAGCTGCTTTCAAAATGCGTGGTCAGAAAGCTAAGCTGAATTTTCCTCATCTCATTGATGCTGAAGATTTTGATACATTGTCAGAATCTGTGAAAGTAACAACTTCGAAGCGAAGTTTGTTAGAAACTTCTTTGCAAACTTCTCCACCGTCATCGCCATCCTCAGATGATAGCTCAGAGTCGCAGTGTACAAAGAGGAGAAAGAGTTTGGTTGATCTATTGAATAAGTTAGCCAAGAATAAAAGCCAAGCCAAGGTGGCATGTTGA 624 0.4471 MASATMDNSDLAFLESVQQYLLGHDSTDLIHVSKPETHGFSSHDPPSSPKCEVDSDRNEEASAVVARQHHAPPTWKHYRGVRRRPWGKFAAEIRDSKKNGARVWLGTYDTEEKAALAYDKAAFKMRGQKAKLNFPHLIDAEDFDTLSESVKVTTSKRSLLETSLQTSPPSSPSSDDSSESQCTKRRKSLVDLLNKLAKNKSQAKVAC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02091 207 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Cca07g02091 207 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Cca07g02091 207 PANTHER DNA-BINDING DOMAIN 1 202 IPR044808 GO:0003700|GO:0009873
Cca07g02091 207 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cca07g02091 207 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Cca07g02091 207 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Cca07g02091 207 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Cca07g02091 207 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 202 - -
Cca07g02091 207 MobiDBLite consensus disorder prediction 157 184 - -
Cca07g02091 207 MobiDBLite consensus disorder prediction 157 178 - -
Cca07g02091 207 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Cca07g02091 207 MobiDBLite consensus disorder prediction 34 59 - -
Cca07g02091 207 CDD AP2 76 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02091 Cca-Chr7 48696711 48697630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02091 46 158 AP2-EREBP Transcription Factor Family AT2G44840 53.982 7.84e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g02091 AP2 4.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02091 K09286 - gmx:548037 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02091 07 48696711 48697630 Cca07g02091 07 48696711 48697630 ECH
Cca01g01588 01 35730375 35731098 Cca07g02091 07 48696711 48697630 PCT