Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02090 ATGGATAATTATTATACTGCTGCTACAACAACAAGAAGTACACTTTGGGACCCTATTGAACAGTACATGGTTGATGATGAAGGCAACGATGATTTGGTCTCAAACGAGAATTTGTTCCTTGGTGTGGAGGGTGGTAAAGAAGAAGATGAGGTTCGGACATGGAAGAGGTACAAAGGAGTGAGGCGTAGGGCACATGGAAAGTTTGCTGCAGAGATAAAGGAGCCAAGCAAAGATGGTAGGATTTGGCTTGGAAGTTATGACACTGAAGAGGAAGCTGCTTTGGCTTATGACAATGCAGCTTTCAAGATTAGAGGCTCCAAAGCCAGACTCAATTTTCCTCATCTCATTCAACCAACTACCCAGatcatcattcatcctcctcctccttcatcatcatctccttctcAAGGATCAAGGAAAAGGAAGGGACTAGCTGCTTTGCTTAATAAATTGGCTCATGAAAGAAATAGAGTTTGA 477 0.3857 MDNYYTAATTTRSTLWDPIEQYMVDDEGNDDLVSNENLFLGVEGGKEEDEVRTWKRYKGVRRRAHGKFAAEIKEPSKDGRIWLGSYDTEEEAALAYDNAAFKIRGSKARLNFPHLIQPTTQIIIHPPPPSSSSPSQGSRKRKGLAALLNKLAHERNRV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02090 158 MobiDBLite consensus disorder prediction 122 144 - -
Cca07g02090 158 PANTHER ETHYLENE RESPONSE FACTOR 43 124 - -
Cca07g02090 158 CDD AP2 55 115 IPR001471 GO:0003700|GO:0006355
Cca07g02090 158 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Cca07g02090 158 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Cca07g02090 158 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Cca07g02090 158 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Cca07g02090 158 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Cca07g02090 158 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
Cca07g02090 158 PANTHER DNA-BINDING DOMAIN 43 124 IPR044808 GO:0003700|GO:0009873
Cca07g02090 158 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02090 Cca-Chr7 48682266 48682749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02090 56 116 AP2-EREBP Transcription Factor Family AT2G44840 69.355 5.22e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g02090 AP2 5.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02090 K09286 - gmx:100819961 167.933