Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02073 ATGGTATCCATCAAAATTCTAGCATTCTGGCGGTTACTTTTCTCCTTTCTCTTGGTCTTTCTAACATATTCTTCACCCCAAGTGGCTTTTTTTCCTAGAATGGTTTCTGCTGCCAGCACAGTTACTGTAGCTGTGAACAGTGAAGCAGAGGCACTGTTGAAGTGGAAAGACAGCCTTTACATGCCCACCAATGATCTTTTGTCAACATGGAGCGGTAATAGTCCTTGCAAATGGGAAGGAATTCAGTGTGACAAATCCAACTCTGTCTCCACCATAAAACTTGCAAATTATGGACTCAAAGGTACACTCCACACTCTCAACTTCTCCTCATTCCCCAACCTCCTCACCCTAGATATCAACAACAACTCCTTTTATGGAACCATTCCCCCACAAATTGGTTACATATTCAAAGTTCACACTTTCAACTTCTCTGTAAATTCATTTAATGGTTCCATCCCTCAAGAAATGTGGACATTAAGGAGTTTACGTAGCCTAGATCTTTCCATATGTTATCTAAGTGGAGCGATTCCTAATTCCATAGCAAACTTGTCCAACCTGTTATATCTAGATTTAGGTAGCAACAGTTTTTCTTGTCACATTCCTCCAGATATTGGAAAGTTGAACAAGTTGAAGCATCTAGTTCTTGCTGATAGTAAGCTTTTCGGTTCCATTCCTAAAGAAATTGGAATGTTGACAAGCCTCCGATATATTGATCTGTCAAGAAATTCTCTCTCTGGTACTATCCCTAAAACGATAGGTAACTTGAGTAGTTTAAACATACTTTCCCTTTCCGAAAACTCCCTGTCTGGACCAATCCCAAACTCCTTATGGAATCTGTCAAGCTTGAACTTGTTATACCTTAATATCAATAGGCTTTCTGGATCAATCTCCACTTCCATACAAAACTTGGTTAGTTTAGAAGTACTTTTACTTCGTGACAACCAACTTTCGGGATTCATTCCTTACACCATTGGAAACTTGACAAATCTCACCTATTTGTATTTAGGCTTTAACAAACTTTCAGGGTCAATTCCTCCTTCTATAGGAAATTTGGTCAATTTGCAGGCACTTAGTTTCCAAAAAAACAATCTCTCTGGAACAATTCCCGCAACAATAGGAAATTTGAAAAGCCTCACCATTTTAGAATTGTCTACCAACAAATTTTATGGAAGCATTCCACAAGTCTTGTATAACAATACCGAATGGTATTCCCTGTTACTGTCTGAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGGGAACCTAAGGTACTTTAATGTTCAACACAATCGTTTCACGGGACAAGTGCCAAGTAGCTTAAAAAATTGCTCTAGTATTGCTAGACTCAGGCTGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGACTTTGGTGTCTATCCAAATTTGGAATACATTGATTTGAGTGACAATAAGTTTTATGGCCAAATTTCACCAAACTGGGGGAAGTGCCCCAATCTTGGTAGCTTGATGATATCCAACAATAATCTCTCTGGTGGTATACCAATTGAGCTTTCTGAGGCAACTAAGTTAGGCAGGTTACACCTTTCTCTGAATCACTTGACTGGAAAGCTACCAAAAGAGCTAAGTAAGCTAAAATCATTAGTTGAATTGAAGATCAACAACAATCATCTTTCAGGAAACATTCCCACTGAAATAGGATTGTTGCAGAATCTTCAAATCTTGGATCTTGGGAAAAACAAGTTGAGTGGCACAATACCAAAACAAGCTATAACGTTGCCCAATTTAATAAAATTGAATTTGAGCAATAATAAAATAAATGGAAGGATTCCCCTTGAGTTTAGCCAATTACAATCACTTCAAACACTTGATCTTAGTGGGAATTTGTTGAATGGAACAATACCAGGAGTGCTCGGAGAGTTGAAGCTATTGCAATGGTTAGATCTCTCTCACAATAATCTTTCTGGAAGTATTCCTTCCAGTTTTGATCACACGTCAAGTTTGATTTCGGTGAACATATCATACAACGAGTTAGAAGGGCCACTTCCAAATAATCAAGCCTTTCTGAAGGCTTCCATTGAATCGTTGAAAAATAACAAAGGCTTATGTGGCAATGTTACTGGCTTGATGATTTGCGCAACCAACCATATTCAAAAAAGGCACAAGGTTAATCTACTGATATTATTTCTTATCTTGGGTGCTCTTATGCTATTTTTGTGTGGGGTGGCTGTTTCAATGTATATTCTTTGTCGAAAAGCAAAGAAGAAAGAAACCCATGCTAAAGAAAAAGAAGAGGCTGGAGAAGTGTTTTCCATATGGGGTCATGATGGAAAAATTATGTTCGAAAAAATCATTCAAGCTACCAATAACTTCGATGACAAAAATCTCATTGGAGTCGGAAGGCAAGGATATGTTTACAGGGCTGAGTTTCCTTTAGGTCAGGTTTATGCAGTGAAGAAACTTCATTTGGAAACAGATGGAGAGAAACCCAATTTTAAAGCTTTTGAAAATGAAATTCGAGCTTTGACTGAAATCAAGCACCGTAACATTATTAAGCTCTATGGATTTTGCTCACATCCACAGGTTTCATTTTTGATTTATAAGTTCTTGGAAGGGGGTAACTTGGATCAAATACTGAGCAATGACACAAAAGCAACTGCATTTGATTGGGAAATGAGGGTGAATGCTATTAAAGGTGTGGCCAATGCTTTATCCTATATGCATCATGGTTGTTCGCCTCCAATAATTCATCGTGACATATCAAGCAAGAATGTTCTTTTGGATTTACAATATGAAGCTTATGTTTCTGATTTTGGGACAGCTAAGATTCTAAAGCCTGGTTCACACACTTGGACCTCATTTGCAGGCACCTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACTATGGAAGTGACCGAGAAATGTGATGTATTCAGTTTTGGTGTGCTTTCTCTAGAAATCATGATGGGAAAGCATCCAGGAGATCTTATTTCTTCATTGTTGTATTCATCTTCATCAACAGTAGCATATAATTTGCTACTAATTGATGTGTTAGACCAAAGACCACCTCAACCTCTAAGATCAATTTTTGGAGATATCATTTTGGTTGCAAGCATGGCATTTTCTTGCTTGAGAGAAAATCCATGTTCTCGCCCAACCATGAATCAAGTGGCGAAAAACCTAATGATGGAGAAATCACCCATAGCAAAACAGTTGCCTGTGATTAAACTTGGACAACTCCTCTAA 3240 0.383 MVSIKILAFWRLLFSFLLVFLTYSSPQVAFFPRMVSAASTVTVAVNSEAEALLKWKDSLYMPTNDLLSTWSGNSPCKWEGIQCDKSNSVSTIKLANYGLKGTLHTLNFSSFPNLLTLDINNNSFYGTIPPQIGYIFKVHTFNFSVNSFNGSIPQEMWTLRSLRSLDLSICYLSGAIPNSIANLSNLLYLDLGSNSFSCHIPPDIGKLNKLKHLVLADSKLFGSIPKEIGMLTSLRYIDLSRNSLSGTIPKTIGNLSSLNILSLSENSLSGPIPNSLWNLSSLNLLYLNINRLSGSISTSIQNLVSLEVLLLRDNQLSGFIPYTIGNLTNLTYLYLGFNKLSGSIPPSIGNLVNLQALSFQKNNLSGTIPATIGNLKSLTILELSTNKFYGSIPQVLYNNTEWYSLLLSENDFTGHLPPQICSAGNLRYFNVQHNRFTGQVPSSLKNCSSIARLRLEGNQLEGDIAQDFGVYPNLEYIDLSDNKFYGQISPNWGKCPNLGSLMISNNNLSGGIPIELSEATKLGRLHLSLNHLTGKLPKELSKLKSLVELKINNNHLSGNIPTEIGLLQNLQILDLGKNKLSGTIPKQAITLPNLIKLNLSNNKINGRIPLEFSQLQSLQTLDLSGNLLNGTIPGVLGELKLLQWLDLSHNNLSGSIPSSFDHTSSLISVNISYNELEGPLPNNQAFLKASIESLKNNKGLCGNVTGLMICATNHIQKRHKVNLLILFLILGALMLFLCGVAVSMYILCRKAKKKETHAKEKEEAGEVFSIWGHDGKIMFEKIIQATNNFDDKNLIGVGRQGYVYRAEFPLGQVYAVKKLHLETDGEKPNFKAFENEIRALTEIKHRNIIKLYGFCSHPQVSFLIYKFLEGGNLDQILSNDTKATAFDWEMRVNAIKGVANALSYMHHGCSPPIIHRDISSKNVLLDLQYEAYVSDFGTAKILKPGSHTWTSFAGTFGYAAPELAQTMEVTEKCDVFSFGVLSLEIMMGKHPGDLISSLLYSSSSTVAYNLLLIDVLDQRPPQPLRSIFGDIILVASMAFSCLRENPCSRPTMNQVAKNLMMEKSPIAKQLPVIKLGQLL 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02073 1079 Pfam Leucine rich repeat 569 628 IPR001611 GO:0005515
Cca07g02073 1079 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515
Cca07g02073 1079 Gene3D Ribonuclease Inhibitor 398 711 IPR032675 -
Cca07g02073 1079 ProSiteProfiles Leucine-rich repeat profile. 593 614 IPR001611 GO:0005515
Cca07g02073 1079 Gene3D Ribonuclease Inhibitor 297 397 IPR032675 -
Cca07g02073 1079 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 11 188 - -
Cca07g02073 1079 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 259 1078 - -
Cca07g02073 1079 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 186 268 - -
Cca07g02073 1079 SUPERFAMILY RNI-like 343 683 - -
Cca07g02073 1079 PRINTS Leucine-rich repeat signature 234 247 - -
Cca07g02073 1079 PRINTS Leucine-rich repeat signature 615 628 - -
Cca07g02073 1079 ProSitePatterns Tyrosine protein kinases specific active-site signature. 913 925 IPR008266 GO:0004672|GO:0006468
Cca07g02073 1079 SMART LRR_sd22_2 615 637 - -
Cca07g02073 1079 SMART LRR_sd22_2 567 588 - -
Cca07g02073 1079 SMART LRR_sd22_2 231 257 - -
Cca07g02073 1079 SMART LRR_sd22_2 327 353 - -
Cca07g02073 1079 SMART LRR_sd22_2 279 305 - -
Cca07g02073 1079 SUPERFAMILY Protein kinase-like (PK-like) 774 1060 IPR011009 -
Cca07g02073 1079 ProSiteProfiles Leucine-rich repeat profile. 641 663 IPR001611 GO:0005515
Cca07g02073 1079 Gene3D Ribonuclease Inhibitor 44 199 IPR032675 -
Cca07g02073 1079 Gene3D Ribonuclease Inhibitor 200 296 IPR032675 -
Cca07g02073 1079 ProSiteProfiles Protein kinase domain profile. 789 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02073 1079 SMART LRR_typ_2 303 326 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 615 638 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 111 135 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 639 662 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 591 614 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 375 399 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 231 254 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 543 567 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 183 207 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 255 279 IPR003591 -
Cca07g02073 1079 SMART LRR_typ_2 327 351 IPR003591 -
Cca07g02073 1079 Gene3D Phosphorylase Kinase; domain 1 748 867 - -
Cca07g02073 1079 Pfam Leucine rich repeat N-terminal domain 46 84 IPR013210 -
Cca07g02073 1079 Gene3D Transferase(Phosphotransferase) domain 1 868 1070 - -
Cca07g02073 1079 Pfam Leucine Rich Repeat 329 351 IPR001611 GO:0005515
Cca07g02073 1079 Pfam Leucine Rich Repeat 642 662 IPR001611 GO:0005515
Cca07g02073 1079 SUPERFAMILY L domain-like 61 390 - -
Cca07g02073 1079 Pfam Protein kinase domain 790 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02073 1079 PANTHER LRR RECEPTOR-LIKE KINASE 186 268 - -
Cca07g02073 1079 PANTHER LRR RECEPTOR-LIKE KINASE 259 1078 - -
Cca07g02073 1079 PANTHER LRR RECEPTOR-LIKE KINASE 11 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02073 Cca-Chr7 48390739 48394386 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02073 27 961 Receptor kinase-like Gene Family AT4G08850 43.203 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca07g02073 Pkinase 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02073 - - gmx:100815688 1492.25