Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02071 ATGGTATCCTTCAAGAATCTGCGGCAGATTCTTCTTTCGTTTATTTTGGTCTTTCAAACACACTCTTCAACCCAAGTTGCTTGTTTTTCCAAAATCAGTGTTACGGTTGGTGATCAAGCTGCAGCTGAGAACAGTGAAGCAAAGGCACTGTTAAAGTGGAAAGACAGCTTTGACAAGTCCAGTAAATATCTCTTGTCAACATGGACAGGTAATAGTCCATGCAAGTGGAAAGGAATTCAGTGTGACAATTCCAACTCTGTCTCCACCATAAATCTTGCATATTATGGACTCCAAGGTACACTCCACACTCTCAACTTCTCCTCATTTCCCAACCTTGCAGTCCTAAATATCTACAACAACTCCTTTTATGGAACCATTCCCCCACAAATTGGTAACTTGTCCAAAGTAAATGTTTTCAATTTTTCTTGTAATTATTTTAGTGGTTCCATCCCTCAAGAAATGTGGACACTGAGGAGTTTACAAGGCCTTGATGTTTCCACATGCCTACTAAGTGGAACGATTCCTAGTTCCATAGCAAACTTGTCCAACCTGTCATATCTTGCTCTGGGTACCAACAATTTTTCAGGGCACATTCCTCTAGAGATAGGAAAGTTGAACAAATTAGAGCATCTAAATCTTGGAAACATTAACCTTGTCGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAACCTTCAATATATTGATTTGTCAAGAAACAAATTGCTCTCTGGTCCTATCCCTAAAACAATAAGTAACTTGAGTAATTTAAATATACTTTACCTTTCTGAAAATCCCCATTTATCTGGGCCAATCCCATCCTCCATATGGAACATGTCTAACTTGACCGAGCTCTTCCTTAATGAAAACAACCTTTCTGGAACGGTCCCTGATTCCGTAGAAAACTTGGCCAATTTAGAGATACTTCTACTTGATACCAACCACCTTTCTGGGTCCATTCCTTCCACCATTGGAAAATTGACAAAGCTAAATGAGTTGTATTTAAATTTTAACAATTTTTCTGGACCAATTCCTCCCTCAATAGGAAATTTGATCAATTTAACTGGCCTTAGTCTCCAAGGAAACAACCTCATCGGAACAATTCCCGCCACAATTGGGAATTTGAAAAGCCTCACCATTTTAGAATTGTCCACCAACAAACTTAATGGAAGCATTCCACAATCCTTGAATAACATCCTCAACTTTGACACCTTGTTATTAGCTGAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGTTCTACTGGCTCACTACTGTACTTTAATGCTTTTCGCAACCGTTTCACGGGTCTCGTGCCAAGAAGCTTAAAGAATTGCTCAAGTATTCTTAGAATAAGACTGGAAGGAAACCAATTGGAGGGAGATATAGCACAAGATTTTGGTGTCTATCAAAATTTGGAATACATTGATTTGAGTGACAATAAGTTTTACGGCCAAATTTCACCAAACTGGGGGAAGTGCCCTAATCTTGATAGCTTGAAGATATCCAACAATAATCTCTCCGGTGGTATACCAATTGAACTTTTTGAGGCAACTAAGCTAGGGAGGCTTCACCTTTCTTCAAATCAACTGTCTGGAAAGCTGCCAAAAGAGCTAGGTATGCTAAAATCATTAAGTGAACTCAACATCAACAACAATCATTTTTCAGGAAACGTTCCCACTGAAATAGGATTGTTGCAGGATCTCCAATTCTTGGATCTTGGAAAAAATGAGTTGAGTGGCCCAATACCAAAACAAGCTATAATGTTGCCCAAATTAGTAAAATTGAATTTGAGCAATAATAGAATAAATGGAAGGATTCCCGTGGAGTTTAGCAAATTGCAGTCTCTTCAAACTCTTGATCTTAGTGGGAATTTGTTGAGTGGAACAATACCAGGAGATCTAGGAGATTTAAAGCAATTGGAAATGTTGGATCTCTCTTCCAATAATCTTTCTGGTACCATTCCATCCAGTTTTGATCTCATGTTCAGTTTGACTTCGGTCAACATATCAAACAACCAGTTAGAAGGGCCACTTCCAAAAACTCGAGCCTTTCTTAAGGCTCCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGCAATGTCACTGGCTTGATGCTTTGCCCAACCAACCACATTCAAAAGAGGCACAAGGGTATTCTGTTGGCATTATTTCTTATCCTGGGTGCTCTTATAGTAGTATTGTGTGGGGTGGGAGTTTCAATGTATATTCTTTGTCGAAAAGCAAAGAAGAAAGAAACTCATGCTAAAGAAAAAGAACAATCAGAGAAAGCACTTGCTGAAGAAGTATTTTCCATATGGAGTCATGATGGAAAAATTATGTTTGAAAATATCATCGAAGCTACCAACAATTTCAATGACACATATCTCATTGGAGTCGGAGGACAAGGATATGTTTACAAGGCTAAGTTGCCTTCGGGTCAGATTTATGCGGTGAAAAAACTTAGTCTGGAAACTGATGGAGAAAAGCCCAATTTCAAAGCTTTTGAAAATGAAATTCGAGCTTTGACTGAAATTAGGCATCGTAACATTATCAGGCTACATGGATTTTGCTCACATTCACGATTCTCATTCTTGGTTTATAATTTCTTGGAAGGGGGTAGCTTGGATCAACTACTAAGCATTGACACAAAAGCAGCTGCATTTGAGTGGGAAATGAGGGTGAATGTTGTTAAAGGTGTAGCCAATGCTTTATCCTATATGCATCATGATTGTAAACCTCCAATAATTCATCGTGACATATCAAGTAAGAATGTTCTTTTGGATTCACAATATGAAGCTCATGTCTCTGATTTTGGAACAGCTAAGATTCTAAAGCCTGGTTCACGCAATTGGACCACATTTGCAGGCACCTTTGGGTATGCAGCTCCAGAGCTTGCCCAAACTATGGAAGTGACCGAGAAATGTGATGTATTCAGTTTTGGAGTGCTTTCTCTAGAAATCATGATGGGGAAGCATCCAGGAGATCTCATTTCTTCATTGCTATCTTCATATTCAGCAACAGTGACTTATAACTTGAAGCTAATTGACTTGTTGGACCAAAGACCACCTCAACCTCTAAAATCAATTTTTGGGGATGTCATTTTGGTTGCTAGCATGGCATTTTCTTGCTTGAGTGAAAATCCATGTTCTCGCCCAACCATGGATCAAGTGTCGAAAAAGCTTATGATGGAGAAATCACCTTTAGCAGAGCAGTTTCCCACGATTAAACTTGGACAGCTGTTGTAA 3255 0.388 MVSFKNLRQILLSFILVFQTHSSTQVACFSKISVTVGDQAAAENSEAKALLKWKDSFDKSSKYLLSTWTGNSPCKWKGIQCDNSNSVSTINLAYYGLQGTLHTLNFSSFPNLAVLNIYNNSFYGTIPPQIGNLSKVNVFNFSCNYFSGSIPQEMWTLRSLQGLDVSTCLLSGTIPSSIANLSNLSYLALGTNNFSGHIPLEIGKLNKLEHLNLGNINLVGSIPQEIGMLTNLQYIDLSRNKLLSGPIPKTISNLSNLNILYLSENPHLSGPIPSSIWNMSNLTELFLNENNLSGTVPDSVENLANLEILLLDTNHLSGSIPSTIGKLTKLNELYLNFNNFSGPIPPSIGNLINLTGLSLQGNNLIGTIPATIGNLKSLTILELSTNKLNGSIPQSLNNILNFDTLLLAENDFTGHLPPQICSTGSLLYFNAFRNRFTGLVPRSLKNCSSILRIRLEGNQLEGDIAQDFGVYQNLEYIDLSDNKFYGQISPNWGKCPNLDSLKISNNNLSGGIPIELFEATKLGRLHLSSNQLSGKLPKELGMLKSLSELNINNNHFSGNVPTEIGLLQDLQFLDLGKNELSGPIPKQAIMLPKLVKLNLSNNRINGRIPVEFSKLQSLQTLDLSGNLLSGTIPGDLGDLKQLEMLDLSSNNLSGTIPSSFDLMFSLTSVNISNNQLEGPLPKTRAFLKAPIESLKNNKGLCGNVTGLMLCPTNHIQKRHKGILLALFLILGALIVVLCGVGVSMYILCRKAKKKETHAKEKEQSEKALAEEVFSIWSHDGKIMFENIIEATNNFNDTYLIGVGGQGYVYKAKLPSGQIYAVKKLSLETDGEKPNFKAFENEIRALTEIRHRNIIRLHGFCSHSRFSFLVYNFLEGGSLDQLLSIDTKAAAFEWEMRVNVVKGVANALSYMHHDCKPPIIHRDISSKNVLLDSQYEAHVSDFGTAKILKPGSRNWTTFAGTFGYAAPELAQTMEVTEKCDVFSFGVLSLEIMMGKHPGDLISSLLSSYSATVTYNLKLIDLLDQRPPQPLKSIFGDVILVASMAFSCLSENPCSRPTMDQVSKKLMMEKSPLAEQFPTIKLGQLL 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02071 1084 SMART LRR_typ_2 327 351 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 639 662 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 181 205 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 109 133 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 303 326 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 543 567 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 615 638 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 279 302 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 591 614 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 229 254 IPR003591 -
Cca07g02071 1084 SMART LRR_typ_2 375 398 IPR003591 -
Cca07g02071 1084 SUPERFAMILY RNI-like 332 681 - -
Cca07g02071 1084 Gene3D Ribonuclease Inhibitor 42 196 IPR032675 -
Cca07g02071 1084 Gene3D Ribonuclease Inhibitor 488 588 IPR032675 -
Cca07g02071 1084 Gene3D Ribonuclease Inhibitor 589 710 IPR032675 -
Cca07g02071 1084 Gene3D Ribonuclease Inhibitor 396 487 IPR032675 -
Cca07g02071 1084 SUPERFAMILY Protein kinase-like (PK-like) 781 1065 IPR011009 -
Cca07g02071 1084 Pfam Leucine rich repeat 230 292 IPR001611 GO:0005515
Cca07g02071 1084 Pfam Leucine rich repeat 570 628 IPR001611 GO:0005515
Cca07g02071 1084 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 258 1083 - -
Cca07g02071 1084 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 183 257 - -
Cca07g02071 1084 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 11 185 - -
Cca07g02071 1084 Pfam Leucine Rich Repeat 642 661 IPR001611 GO:0005515
Cca07g02071 1084 ProSiteProfiles Protein kinase domain profile. 794 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02071 1084 Gene3D Ribonuclease Inhibitor 296 395 IPR032675 -
Cca07g02071 1084 Gene3D Ribonuclease Inhibitor 197 295 IPR032675 -
Cca07g02071 1084 PANTHER LRR RECEPTOR-LIKE KINASE 258 1083 - -
Cca07g02071 1084 PANTHER LRR RECEPTOR-LIKE KINASE 183 257 - -
Cca07g02071 1084 PANTHER LRR RECEPTOR-LIKE KINASE 11 185 - -
Cca07g02071 1084 Pfam Protein kinase domain 797 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02071 1084 SMART LRR_sd22_2 375 401 - -
Cca07g02071 1084 SMART LRR_sd22_2 327 353 - -
Cca07g02071 1084 SMART LRR_sd22_2 279 305 - -
Cca07g02071 1084 SMART LRR_sd22_2 639 662 - -
Cca07g02071 1084 SMART LRR_sd22_2 229 256 - -
Cca07g02071 1084 SMART LRR_sd22_2 591 620 - -
Cca07g02071 1084 Pfam Leucine rich repeat N-terminal domain 44 82 IPR013210 -
Cca07g02071 1084 PRINTS Leucine-rich repeat signature 618 631 - -
Cca07g02071 1084 PRINTS Leucine-rich repeat signature 639 652 - -
Cca07g02071 1084 ProSiteProfiles Leucine-rich repeat profile. 641 663 IPR001611 GO:0005515
Cca07g02071 1084 Gene3D Phosphorylase Kinase; domain 1 751 872 - -
Cca07g02071 1084 ProSitePatterns Tyrosine protein kinases specific active-site signature. 918 930 IPR008266 GO:0004672|GO:0006468
Cca07g02071 1084 Gene3D Transferase(Phosphotransferase) domain 1 873 1075 - -
Cca07g02071 1084 SUPERFAMILY RNI-like 90 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02071 Cca-Chr7 48351943 48355813 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02071 25 966 Receptor kinase-like Gene Family AT4G08850 43.096 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca07g02071 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02071 - - gmx:100814634 1601.26