Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02064 ATGCTCCTCCGTTACTCTCTGCATCTCCCAATTGTATCTTCTCACTCACGGAACTCTAACCGCAACCCCAACACGAGCGGTTACATAAAGTTCCGAACGAGGTACCGCGAAAACCTGCGATACCTTCGAGCCTTAACCATAATCGATCCTAAAACCAATCCCGAGGATCTCCCTCTCCCCAACGACGTGGACCACATCATCGACACCATCACATTCCTCAAGTCTCGCTCCTTCTCCGACGCCGATATTCCCCGCCTCAACTTCCTCACTCCTCAGCTCTTCACCACCGCCGTCCTCCCCTCCGACATAGCCGCCGTATTCCGCTTCCTCGCCGACGACCTCGGTGCCAACGAATCGGAGTCCCGCGGTCTGGTCGTCCGCTGCCCCAAACTCCTCTTCTCCCACGTCGACCTCTGCCTCCGACCCACGTTGCAATTCCTCCGCCAGGTTGGAATTGGCGAGCTGAACCGGCCCACGACCCGGAACGCACACTTGTTAAACACGCGTGTTGATAAGCTTCACGCAAAGGTTCAGTTCCTTCAGGAGTTGGGCTTTTCGTATGAGGAGGCTCTCAGGGCTTGTGCCAGGTTACCGGCCATTTTTGGGTACGACGTGGAGAACAATCTGTGGCCCAAATATGTGTACCTTGTCAAGGAAATGGAGAGGGATTTGGAGGAGTTGAAGAACTTTCCTCAGTACTTTGCCTTCAGTTTGAAGGACAGGATTGTGCCAAGACACTTGCATTTGAAGGAGAGGGGTCTTAGGATTCCCTTGAACAGAATGTTGATGTGGGGTGATCAAAACTTCTATGCCAAGTGGAAGTGA 825 0.5333 MLLRYSLHLPIVSSHSRNSNRNPNTSGYIKFRTRYRENLRYLRALTIIDPKTNPEDLPLPNDVDHIIDTITFLKSRSFSDADIPRLNFLTPQLFTTAVLPSDIAAVFRFLADDLGANESESRGLVVRCPKLLFSHVDLCLRPTLQFLRQVGIGELNRPTTRNAHLLNTRVDKLHAKVQFLQELGFSYEEALRACARLPAIFGYDVENNLWPKYVYLVKEMERDLEELKNFPQYFAFSLKDRIVPRHLHLKERGLRIPLNRMLMWGDQNFYAKWK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02064 274 Gene3D Transcription termination factor 3, mitochondrial 56 274 IPR038538 -
Cca07g02064 274 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 13 274 - -
Cca07g02064 274 SMART mt_12 191 223 IPR003690 GO:0003690|GO:0006355
Cca07g02064 274 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Cca07g02064 274 SMART mt_12 156 186 IPR003690 GO:0003690|GO:0006355
Cca07g02064 274 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Cca07g02064 274 Pfam mTERF 161 269 IPR003690 GO:0003690|GO:0006355
Cca07g02064 274 PANTHER CGI-12 PROTEIN-RELATED 13 274 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02064 Cca-Chr7 48151064 48152965 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca07g02064 mTERF 8.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02064 K15032 - gmx:100812333 493.426