Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02052 ATGGAGCAAGAACCTGAGGAAGTTCCAAATGGGTCGGCTAAGGTGGAAAATAATGAAGATGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACATTTAGATTTGGAGGATAATTATCCCGAGTATGAACAGGAGGAATATGGTGGTGTTGACTATGATGAAAAGGAAATTGAACAAGATGATGGTCAGGAGGAGGGAGATGAAGTGGAGGAAGATCTAGAAGAGAATGTAGGTGAAGAAGAGGCTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGAGCATGCTGGTGAGGAGCATACTCATGATGAGCATGCACAAATGCCTGATGTGGAAGATGAGGAACACCGTGAAGTTGTAAAGGAGAGGCAAAAGCGGAAGGAATTTGAAGTATTTGTTGGGGGCTTAGATAAGAATGCTACTGAGCATGACCTGAGGAAGGTTTTCAGTAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACCAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAGGCAAAAAGAGCTGTGACAGAGCTAAAAAATCCAGTGATTAATGGAAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGGAACATATGCAAGACTTGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGGAGTAGAAAATATAGAGGAATTGACTTTAGTAGAAGATGATACCAATGAGGGAATGAACCGAGGATTTGCATTTTTGGAGTTTTCTTCTCGTTCAGATGCTAAGGAAGCCTATAGGCGATTGCAAAAGAGAGATGTTGTTTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCTGACTCATTTATTGATTTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATATGGGGAGATTGAAAAAATTGAGCTTGCTAGGAACATGCCAGCTGCTCGGAGGAAGAACTATGGATTTGTTACATTTAGTTCGCATGCTGCTGCTGTGGAATGTGCTGAAAGCATTACCGGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGGCCTCTTTCAAAACCTCTCCAGAGAGGTCGTGGAAAACATGTTAATCATGGGGACTTCCGTTCCGGACGCAATTCTGGAAGATTGGTTAGGCCTTCACGGAGTCGACCTGCACCACGTAGTCTCCCCGCACGTGTGGTGAGAGGTGTGGTGAGAGGAGTTGGAAGTCGTGGTCCACCAGTTAGACCTGTTAGTGTGAGAAGTAGACGTCCTGTCACATCCATGGTAGAAAGAGCCAGGCCAGTGGCTCCTCCAGCTAGAACCTATGACAGGAGATTGACTGCTCCTGCATATCCTAAAAGTGGCATAAAAAGAGATTACAGTCGACGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGCTCTAGGGTAGCCTCTCAGAGGCACACGTCTTATATGGATTATCCTACCCGTGGCTCTGACTACCCTGAGCTACATAGAAGTACATCTCGTGTTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAGAGATTTGAGAGGcctcctcctcctcctccGCATCTAAGTTACCGTGAAGGACGCCCCCGTGATTATGACACTCTATCTGGTTCAAAACGTCCTTATACTGCTATTGATGATGTTCCTCCACGATATGATACTGGTACTCGCCAATCAAGATCTCGTTTAGACTATGATTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTCTTGGATACAGTGGCAGCAGAAGTTCTATATCTAATCAAGACTTACATGGGACATATGGTAGTCGGCAAGGCATGAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATAGTGGTATGTACTCATCAAGTTATGGTGGTGATTACGTATCTCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCCATGTGGATCTGGGTCTTATTATTGAGATCCAAATACAATAAAGAGGCTGCTGTAGGATGTGGAATTTGA 2178 0.4284 MEQEPEEVPNGSAKVENNEDEVKESIDEYEKDEHLDLEDNYPEYEQEEYGGVDYDEKEIEQDDGQEEGDEVEEDLEENVGEEEADTGDEEVEYVYEEVEDDDDEHAGEEHTHDEHAQMPDVEDEEHREVVKERQKRKEFEVFVGGLDKNATEHDLRKVFSKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENIEELTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSSHAAAVECAESITGAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHVNHGDFRSGRNSGRLVRPSRSRPAPRSLPARVVRGVVRGVGSRGPPVRPVSVRSRRPVTSMVERARPVAPPARTYDRRLTAPAYPKSGIKRDYSRREDLPPPRSRVAADYGSRVASQRHTSYMDYPTRGSDYPELHRSTSRVAPKRGYVDDGYGQRFERPPPPPPHLSYREGRPRDYDTLSGSKRPYTAIDDVPPRYDTGTRQSRSRLDYDYGGSASQYGDAYGDRLGRSSLGYSGSRSSISNQDLHGTYGSRQGMSYGGGSFGGSDSGMYSSSYGGDYVSRGSDVGGRSYSSMWIWVLLLRSKYNKEAAVGCGI 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02052 725 MobiDBLite consensus disorder prediction 499 513 - -
Cca07g02052 725 Gene3D - 77 213 IPR012677 -
Cca07g02052 725 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 303 IPR000504 GO:0003723
Cca07g02052 725 SMART rrm1_1 317 392 IPR000504 GO:0003723
Cca07g02052 725 SMART rrm1_1 140 213 IPR000504 GO:0003723
Cca07g02052 725 SMART rrm1_1 220 299 IPR000504 GO:0003723
Cca07g02052 725 MobiDBLite consensus disorder prediction 108 127 - -
Cca07g02052 725 Coils Coil 12 32 - -
Cca07g02052 725 Gene3D - 219 302 IPR012677 -
Cca07g02052 725 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 398 IPR000504 GO:0003723
Cca07g02052 725 SUPERFAMILY RNA-binding domain, RBD 216 303 IPR035979 GO:0003676
Cca07g02052 725 MobiDBLite consensus disorder prediction 7 21 - -
Cca07g02052 725 MobiDBLite consensus disorder prediction 1 127 - -
Cca07g02052 725 MobiDBLite consensus disorder prediction 401 437 - -
Cca07g02052 725 MobiDBLite consensus disorder prediction 39 107 - -
Cca07g02052 725 PANTHER RNA RECOGNITION MOTIF 2 704 - -
Cca07g02052 725 CDD RRM_SF 318 392 - -
Cca07g02052 725 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 2 704 - -
Cca07g02052 725 MobiDBLite consensus disorder prediction 540 554 - -
Cca07g02052 725 Gene3D - 307 428 IPR012677 -
Cca07g02052 725 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 287 IPR000504 GO:0003723
Cca07g02052 725 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 380 IPR000504 GO:0003723
Cca07g02052 725 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 209 IPR000504 GO:0003723
Cca07g02052 725 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Cca07g02052 725 MobiDBLite consensus disorder prediction 488 623 - -
Cca07g02052 725 SUPERFAMILY RNA-binding domain, RBD 140 379 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02052 Cca-Chr7 48078283 48082681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02052 141 383 Eukaryotic Initiation Factors Gene Family AT3G16380 25.483 2.17e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02052 - - gmx:100811387 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01529 01 33454649 33461320 Cca07g02052 07 48078283 48082681 PCT