Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02043 ATGGCTGCAGTTGCCCACTTTATTTGTCTCTCTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTCCCTTCCAACCTCATCCCATTCCGTTTTCTCTGCAGTACTCAATTGATCCCTTTGTTTTTCTATTCGTTCTGAGAGCTTTGTATGATGAGAACCAACAAGACCAAGACAACAACGTTAACACTCACGAAGGGCTTGACCTAGTTACACCAAATCCAGGTCCTGGTGATGTTGTTGGTCGCAGGCCTAGAGGAAGACCTCCAGGTTCAAAGAACAAGCCAAAACCACCTGTTATCATCACAAGAGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTCAGTAGTGGCTGTGATGTGTTTGACTCGGTCGCCACCTATGCAAGGAAGCGACAGAGAGGGATCTGTGTTCTCAGTGGAAGTGGCACCGTGACTAACGTGACGTTACGGCAGCCGGCCGCAGCCGGTGCCGTCGTCACACTACACGGGAGATTTGAGATCCTGTCCTTATCAGGATCTTTCCTCCCACCACCAGCTCCACCAGATGCTACAAGTTTGACCGTGTTCCTTGGTGGAGGACAGGGTCAAGTGGTGGGAGGAAATGTTGTTGGTCCATTGGTAGCTTCTGGACCTGTTATTGTTATTGCTTCATCTTTTACTAATGTGGCATACGAGAGGTTGCCCTTGGATGAAGATGAATCTATGCATATGCAACAAGGGCAGTCATCtgctggaggtggtagtggtggcagcggtggtggAGTTAGTAATAACTCTTTTCCGGACCCGTCTTCTGGACTTCCATTCTTCAATTTGCCCCTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAACTCCGGTGGAAGGCAATCTTACTGA 966 0.4172 MAAVAHFICLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPFQPHPIPFSLQYSIDPFVFLFVLRALYDENQQDQDNNVNTHEGLDLVTPNPGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPDATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESMHMQQGQSSAGGGSGGSGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02043 321 MobiDBLite consensus disorder prediction 257 299 - -
Cca07g02043 321 Coils Coil 12 12 - -
Cca07g02043 321 MobiDBLite consensus disorder prediction 262 292 - -
Cca07g02043 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 77 321 - -
Cca07g02043 321 Gene3D - 134 268 - -
Cca07g02043 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 77 321 IPR014476 GO:0003680
Cca07g02043 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 264 - -
Cca07g02043 321 CDD DUF296 135 210 IPR005175 -
Cca07g02043 321 ProSiteProfiles PPC domain profile profile. 131 268 IPR005175 -
Cca07g02043 321 MobiDBLite consensus disorder prediction 81 124 - -
Cca07g02043 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02043 Cca-Chr7 47953076 47954263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02043 105 317 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 72.093 1.40e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02043 - - gmx:100814613 395.586