Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02040 ATGCAAACcttgttcttgttcttattattgtcccttttcctttccttcttctCATGTGCATTCTCATCGCAACCCTTCTTCTTCCTCAACAGAAGAACCCTCCATGAACCCTTTATACCATCAACCTCTCTCCCTCCTTCACAACCACCACAACCATCACCTCTTCACCCTTCAACCCAAAAACAAAAACCCAAATACCCATCATCCACCATTCcaactacttccaccaccacaacaacaacaacaaccacaacaccagcaacaacaaATCCAAATTCACCATTTTTCCCATTATACCCTTCTTCCCCTCCACCTCCCCCATTTTCCCCAACCACCTTTGCTTCCTTCCCTGCCAACATCTCCTCCCTTGTTATCCCTCACTCCCCCAAACCCAACTCCTCCTCCAACAAACTCCTCCCCCTCGCCCTCTCCGCCGCCGCAGCCGCCGTACTCGCCGTCGCCCTCTCCGCCTTCGTCTGCTACCGCCGCCGGAACCCTCCCCCCGCCATCCACCGCAAAATTCTCCGCTCCGACACCGACCTCGCCCCTCTCCGCCGCAATGCCGACACCGCCGCCGTCGAAACCCGCAAGCTCCGCCACACCTCCTCCGCCAGCTCTGAGTTTCTCTATCTCGGCACCGTCGCCAACACTCACTTAATTGAAGACGCCGCCGGCGATGTCTCCGACGACCGGAAAATGGAGTCGCCGGAGCTCCGGCCGCTTCCGCCGCTCGCTCGGCAGGCTTCATTGCCTCCGCCGCCGCATCCTCCGCCGCGCGATGACCCGGGTTTCACCACCGCGGAGGAGGAGGAAGACGACGGCGACGAGGAGTTTTACTCGCCGAGAGGCTCGTCGTTGGGAGGCTCCGGCGAAAATGGATCGGATTCCCGGCGAGTTTTCGCCGCCGGGGGAATCGCCACCGTCAcctctagcttgtgctcttcctcttcctctgcctcGCCGGAGAGGTCTCATTCCATCAGCCTCTCGCCGCCGGCGAGTTCGAGCCCCCGGAGAACACAACCAAAATCGCCGGAAAACTACAACCATCAGCACGTGCAATCTTCTCCTTCCTCTCCTTCGTTATGCTCAACTCCAGATAGGGTTTTCAGTGAACATGATAACGATGCATTGAatgcacgtgcacgtgcacattcacatgcatcatcacaCGAAGGAACATTGGAGAAAAACGAAAATGCGTCACCACCACCACCGAGACTATCTAATGCTTCTTCGTCTTCGGCGTTTTCTCTTCCCTCTTCGCCGGAGAAGTTGACACGTCATCACACGTTCGATCAGTCTCCGAGAATTTCGAGTTTCTCCGACGGACTAATGTTACCGAGTCTGTCATCATTGCCTGTGTCACCCGCCCTACTTTCGTCACCGGAAACCGACAGAGGAATGTCGAGTCAATTGGGAACAGGCTCCTACGGTGTGCCTGCGCCGCAGAGGAAACACTGGAACATTCCACTACTCTCAATAGCAACACCCTTTGATGAAATTGGAACTGTTCCAGCTCCTCCACCTGTGCCACAAAGGAGGCACTGGGAGATTCCCGGCCCTGCTCCACCGCCGCCTCCGCCTCTGCCACGGCAGAGGAAGCAGTGGGGAGTGCCGCCGCCGGGGCCATCGACACAGCCAGCGTCGAGGCCGCCGGAATTGGTGCCTCCTTCTAGGCCTTTTGTGTTGCAAAACCAAGCAAACAATGTTTTGGGGGAAATTGAAGAGACTAGTAAACCCAAGTTGAAGGCCCTGCATTGGGACAAAGTGAGAACAACATCTGATCGTGAAATGGTGTGGGATCAGATGAAGTCGAGTTCGTTTAAATTGAATGAGAAAATGATTGAAACATTGTTTGTAGTGAACACACCAAACCAAAAACCTAAGGATGCAACTGCAAACTCAGTTTTTCACCTGCCAAATCAGGAGGAAAGAGTGCTTGATCCTAAAAAGTCTCAAAATATTTCAATCTTGCTGAAAGCGCTTAATGTCACTATAGAAGAAGTGTGTGAAGCACTTTTAGAAGGTAGTACTGATACACTTGGAATAGAATTACTTGAAAGCTTATTAAGAATGGCACCAAGCAAGGAAGAAGAACGTAAGTTGAAGGAACATGAAGATGACTCACCAACCAAGCTCGGTCTGGCTGAGAAATTTTTGAAGGCAGTGCTTGATGTGCCTTTTGCATTTAAAAGGATTGAAACAATGCTTTACATAGCCAATTTTGAGTCGGAAGTGGAGTATCTTAGGACATCCTTTCAAACTCTAGAGGCTGCCTGTGAAGAGCTGCGACATTGTAGATTGTTCTTGAAGCTTCTGGAGGCTGTACTAAAAACTGGGAACCGTATGAATGTGGGAACCAACCGTGGGGATGCAGAAGCATTCAAACTTGATACTCTTCTCAAACTGGCCGATGTTAAAGGCGCAGATGGGAAAACCACTCTACTGCATTTTGTTGTGCAGGAAATTATTCGAACCGAAGGAGCTCGGCTCTCCAACACGAATCAAACTTCAAGCTCTACTTTGAGTGAAGATGCCAAGTGCAGGAGGCTTGGCCTACAAGTTGTATCAAGCCTGAGTTCCGAGCTAGCAAATGTGAAGAAGGCTGCTGCTATGGATTCTGAAGTTCTCAGCAGTGATGTCTTAAAACTTTCCAAAGGAATTGCAAACATAGCAGAGGTTGTGCAATTAAATCAAACCACAGGATCAGATGACAGCAGCCAGAAGTTCACAGAATCAATGAACAAATTCATCAGAATGGCTGAGGAGGAAATTCCAAAAATCCAAGCCCAAGAAAGTGTTGCTTCCTCTCTTGTGAAGGAAATCACTGAGTATTTTCATGGGAACTTGGCAAAGGAAGAAGCTCATCCATTTAGAATCTTCATGGTTGTAAGAGACTTTCTAGCAGTTCTTGACCGGGTCTGCAAAGAAGTTGGAATGATAAATGAGAGAACCATGGTTAGTTCGGCCCATAAATTCCCTGTGCCAGTTAACCCAATGCTTCCACAACCCCTTCCTGGATTACATGGAGGGCAACAGCATAACAACTCTTCAGATGATGACAGTTCATCACCTTAG 3081 0.4755 MQTLFLFLLLSLFLSFFSCAFSSQPFFFLNRRTLHEPFIPSTSLPPSQPPQPSPLHPSTQKQKPKYPSSTIPTTSTTTTTTTTTTPATTNPNSPFFPLYPSSPPPPPFSPTTFASFPANISSLVIPHSPKPNSSSNKLLPLALSAAAAAVLAVALSAFVCYRRRNPPPAIHRKILRSDTDLAPLRRNADTAAVETRKLRHTSSASSEFLYLGTVANTHLIEDAAGDVSDDRKMESPELRPLPPLARQASLPPPPHPPPRDDPGFTTAEEEEDDGDEEFYSPRGSSLGGSGENGSDSRRVFAAGGIATVTSSLCSSSSSASPERSHSISLSPPASSSPRRTQPKSPENYNHQHVQSSPSSPSLCSTPDRVFSEHDNDALNARARAHSHASSHEGTLEKNENASPPPPRLSNASSSSAFSLPSSPEKLTRHHTFDQSPRISSFSDGLMLPSLSSLPVSPALLSSPETDRGMSSQLGTGSYGVPAPQRKHWNIPLLSIATPFDEIGTVPAPPPVPQRRHWEIPGPAPPPPPPLPRQRKQWGVPPPGPSTQPASRPPELVPPSRPFVLQNQANNVLGEIEETSKPKLKALHWDKVRTTSDREMVWDQMKSSSFKLNEKMIETLFVVNTPNQKPKDATANSVFHLPNQEERVLDPKKSQNISILLKALNVTIEEVCEALLEGSTDTLGIELLESLLRMAPSKEEERKLKEHEDDSPTKLGLAEKFLKAVLDVPFAFKRIETMLYIANFESEVEYLRTSFQTLEAACEELRHCRLFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSNTNQTSSSTLSEDAKCRRLGLQVVSSLSSELANVKKAAAMDSEVLSSDVLKLSKGIANIAEVVQLNQTTGSDDSSQKFTESMNKFIRMAEEEIPKIQAQESVASSLVKEITEYFHGNLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGMINERTMVSSAHKFPVPVNPMLPQPLPGLHGGQQHNNSSDDDSSSP 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02040 1026 Gene3D Formin, FH2 domain 579 993 IPR042201 -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 245 261 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 42 57 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 369 394 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 999 1026 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 504 561 - -
Cca07g02040 1026 SMART it6_source 573 987 IPR015425 -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 403 425 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 310 368 - -
Cca07g02040 1026 PANTHER FORMIN-LIKE PROTEIN 1 12 342 - -
Cca07g02040 1026 PANTHER FORMIN-LIKE PROTEIN 1 343 1026 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 504 559 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 1010 1026 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 458 480 - -
Cca07g02040 1026 ProSiteProfiles Formin homology-2 (FH2) domain profile. 573 998 IPR015425 -
Cca07g02040 1026 SUPERFAMILY Formin homology 2 domain (FH2 domain) 524 984 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 58 92 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 458 478 - -
Cca07g02040 1026 Pfam Formin Homology 2 Domain 577 972 IPR015425 -
Cca07g02040 1026 PANTHER FORMIN-RELATED 343 1026 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca07g02040 1026 PANTHER FORMIN-RELATED 12 342 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca07g02040 1026 MobiDBLite consensus disorder prediction 310 438 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 40 92 - -
Cca07g02040 1026 MobiDBLite consensus disorder prediction 225 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02040 Cca-Chr7 47913230 47917413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02040 550 1014 FH2 protein (formin) Gene Family AT3G25500 72.917 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02040 - - vun:114185313 1318.52