Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02034 ATGGGTGATGATGATTTGTTGGATGAAAGCCTAAGGCACATGAGCCATTTCAATGGAGAGTCGAAGAGAGAGGGTGGCATCATTGTTCAGCAAACAGTTTTCTCCAATGAAAGTGGCAGCCCCTCTCCCAATTCCTCTTCTTCCTCCCTTCAAACCAACTTCGGTGGTGCTGAAACAAGCTTCAAACCCTACTGGTCATTTCCAACGAGTTATGTTTTGTCTTTTGATAACTGTGTTGCTGAACCAGTTTCTACAAGCACGAGACGAAGCCATTATTATCGCAATATTCAACCAATGGTGCAGCCACAAACAAAGACACGAAGAGCTCACATATTGGCCGAGAGAAAAAGAAGGGAGGAATTGACTAAGCTCATCGTGGCACTTTCAGCCACCATTCCCGGCTTGAAAAAGGCAGACAAGGCCAGTGTGTTACGTGAAGCTACCAATTATGTGAAACAACTTGAAGAGCGAGTGAAAGAGCTAGAGAATCAAAAGAAAAATGAATGCGTTGATCATTCAACAATTCTCATGAAGAAAACGTTACTGTGCATGAATGATGGAGCTACTCTTGGATGCGTGGAAGAACTACCCAAGGTGAAAGTAACTGTTTTAGAGAAGGAAATGCTCATTGAAATCCATTGTGAGAAACAAAGACAGAGTATGCTCAAAATAATATTATTGCTTAATAATCTCCATCTTTCTATAACCAGTTCCAGCGTATTGCCATTTGGAACTTCCACTCTTAAAATTACCATCATCGCTCAGATGGATGATAAATATAACATGGCAGTTGATGATCTAGCACACACATTGAGACAACTGTTATTGAGTTTGAAGTCACAGGATGTGCAAAAGTGA 858 0.4114 MGDDDLLDESLRHMSHFNGESKREGGIIVQQTVFSNESGSPSPNSSSSSLQTNFGGAETSFKPYWSFPTSYVLSFDNCVAEPVSTSTRRSHYYRNIQPMVQPQTKTRRAHILAERKRREELTKLIVALSATIPGLKKADKASVLREATNYVKQLEERVKELENQKKNECVDHSTILMKKTLLCMNDGATLGCVEELPKVKVTVLEKEMLIEIHCEKQRQSMLKIILLLNNLHLSITSSSVLPFGTSTLKITIIAQMDDKYNMAVDDLAHTLRQLLLSLKSQDVQK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02034 285 SMART finulus 111 160 IPR011598 GO:0046983
Cca07g02034 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 166 IPR036638 GO:0046983
Cca07g02034 285 Gene3D - 98 168 IPR036638 GO:0046983
Cca07g02034 285 Coils Coil 144 171 - -
Cca07g02034 285 Pfam Helix-loop-helix DNA-binding domain 107 155 IPR011598 GO:0046983
Cca07g02034 285 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 18 277 - -
Cca07g02034 285 PANTHER BHLH TRANSCRIPTION FACTOR 18 277 - -
Cca07g02034 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 154 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02034 Cca-Chr7 47861041 47867213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02034 28 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.218 1.39e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g02034 HLH 5.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02034 - - gmx:100807144 273.863