Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02033 ATGGAAGATTCATTGGAGAATTGGATTTCTCAAATGGATGAAGTGTTGAATGAAAGTGATAGGGCATTTGATGAGGAAGAGTTCCTAAGAGGGATCCTTGAGCATGAAAGGGAACACCCCTCCAACAGCTCCACCAACAGCAGTGTGTCCATTGAAGAGGCAACAACAAGCCTTAGAGGAAGGAGTGGCACCCTCAAAAGCAACAGCTCCAACTCCATAAAGTCCTTCAAAACATCATGTGCCACATACCTTCTGTCTTTTGACAACTCAAGTGCTGAACCAATCACACATATTGAACCTTCCCCAAAGGGATTGGGCTTGGGATGTTCCAACAAAAGGACTGCAGTGAAAGAATTGGAAGAATGGAAGCCCCAACCAAAGAAGAAGATTAGAAGGTCATCTGACTCACAACATCACATAATTGCTGAGAGGAAAAGGAGACAGGAACTTACAGGGAGCATCATAGCACTTTCAGCCATAATTCCTGGCCTCAAAAAGATGGACAAGGCCTATGTACTTGGTGAAGCTATCAATTACACAAAACAACTTCAAGAGCGAGTTAAAGAGTTGGAAAATCAAAACAAAGACAAAAGAGTAGATTCAGCAACACTCGTAAGAAAATCTCAAAGCAATGACAATGGAGAAACGAACACGGAATCACTGTTTGAGGTTGAAGTAAGAGTATTAGACGAAGAAGTATTCATTGGAATCCATTGTGAGAAGCAAAAGGACACAGTTTTCAAAATACATGCCTTGCTTGGAAAGCTCCATCTTTCTGTAAACACTAGCAGCGTGTTACCATTTGGCTCTTCTACTCTTGTAATCAACATTATTGCTCAGATGGATGAGGGATACAAGATGACCATGGATGAGCTAGTGAAAAAACTTAGAGAATATCTTTTGGAAGTGTATGACAGCAATAATGGTCCGTGCTAG 936 0.4135 MEDSLENWISQMDEVLNESDRAFDEEEFLRGILEHEREHPSNSSTNSSVSIEEATTSLRGRSGTLKSNSSNSIKSFKTSCATYLLSFDNSSAEPITHIEPSPKGLGLGCSNKRTAVKELEEWKPQPKKKIRRSSDSQHHIIAERKRRQELTGSIIALSAIIPGLKKMDKAYVLGEAINYTKQLQERVKELENQNKDKRVDSATLVRKSQSNDNGETNTESLFEVEVRVLDEEVFIGIHCEKQKDTVFKIHALLGKLHLSVNTSSVLPFGSSTLVINIIAQMDEGYKMTMDELVKKLREYLLEVYDSNNGPC 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02033 311 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 306 - -
Cca07g02033 311 MobiDBLite consensus disorder prediction 33 72 - -
Cca07g02033 311 PANTHER BHLH TRANSCRIPTION FACTOR 4 306 - -
Cca07g02033 311 Pfam Helix-loop-helix DNA-binding domain 137 184 IPR011598 GO:0046983
Cca07g02033 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Cca07g02033 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 201 IPR036638 GO:0046983
Cca07g02033 311 SMART finulus 140 189 IPR011598 GO:0046983
Cca07g02033 311 Coils Coil 173 207 - -
Cca07g02033 311 MobiDBLite consensus disorder prediction 42 72 - -
Cca07g02033 311 Gene3D - 125 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02033 Cca-Chr7 47856945 47859356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02033 131 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.276 3.45e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g02033 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02033 - - gmx:100806078 350.132