Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02024 ATGGGGTCTATGAATTTGTTGGGGTTTTCTCTCTCTCCTCAAGAACACCCTTCGAGTCAAGATCACTCTCAAACGGCACCTTCTCGTTTTGGCTTCAACTCTGATGGAATCTCAAGCACTGATGTAGCAGGAGAATGCTTTGATCTCACTTCTGACTCAACTCCTCATTTACTCAATCTTCCTTCTTATGGCATATACGAAGCATTTCACAGAAACAATAATATTCACACCACTCAAGATTGGAAGGAGAACTACAACAGCCAAAACTTGCTATTGGGAACTTCATGcaacaaccaaaacatgaaccacaaccaacaacagcaacaacaacaGCCAAAGCTTGAAAACTTCCTAGGTGGACACTCATTTGGTGATCATGAGCACCAAACATACGGTGGTAACTCAGCCACAACAGATTACATGTTTCCGGCTCAGCCGGTAGCGGCCAgtggcggtggcagtagtggtggcggcggcagtAGTGCGAACAATAGTAACTCGATAGGGTTGTCAATGATAAAGACATGGTTGAGGAACCAACCCCCACACTCAGAAAACAACAATGAAAGTGGTGGCAATAGCAAAAGTAGTGTGCAAACACTATCACTTTCCATGAGTACTGGTTCACAATCAAGCTCATCGTTGCCCCTTCTCACTGCTGGTGTGGATGGAGAGAGTTCTTCAGATAACAAACAACCACTAACCACAGTTGCACTTGATACCACACAAACTGGAGTCATTGAAACTGCACCCAGAAAATCCATCGACACGTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGCATAGGTGGACAGGGAGGTATGAGGCTCACCTGTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCTATTAGCCACTATGAGAAAGAGTTGGAAGAGATGAAGCACATGACTAGACAAGAGTACGTTGCGTCGTTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACGAGAGTTGCAGGCAACAAGGATCTCTACTTGGGAACTTTCAGCACTCAAGAGGAGGCAGCAGAGGCATATGATGTTGCAGCCATAAAATTCCGAGGACTGAGTGCAGTTACAAACTTTGATATGAGCAGATACGACGTTAAGAGCATTCTTGAGAGCACCACTTTGCCAATTGGTGGTGCTGCCAAGCGTTTGAAGGACATGGAGCAAGTGGAACTGGGTGTGGATGGCCATAGAGATCAAGAAGATCATAGCATTATGAACTCTCACATCACTCAAGGGATCAGTAACAACTATGGAGGAGCAACAACTTATCATAACTGGCACAATGCTCTTGCATTCCACCAACCTCAACCTTACACCACCATACATTACCCTTATGGACAGAGGCAATGGTGCAAGCAAGAACAACAAGACACTTCTGATGCCTCTCACCCTTTGTCTTATCCAGATGTTCATCAACTTCAGCTAGGGAATAACAGCACTCATAATTTCTTTCACTCAAATTCAGGGTTGCACCCTATGATGAGCATGGATTCTGCTTCCATTGACAATAGCTCTTCATCTAACTCGGTTGTTTAtgatggttatggaggtggtggtggtgggggATATGTGATTCCTATGGGAACTACTACTACTGTTGTTGCAAGTGATGGTGATCAAAGTCAAAGAAGCAATAATGGTTTTGGTGAGAATGAGATGAAGGCACTTGGTTATGAAAGTGTTTATGGTTCTAATGATGCTTATCATGCACATGCAAGGAACTTGTATTATCTTTCCCAACAGCAACCATCTTCTGTTGATGCTGTGAAGGCTAGTGCATATGATCAAGGTTCTTCATGCAACACTTGGGTTCCAACTGCTATTCCAACTCTTGCACCAAGGTCTACTAGCATGGCTCTTTGCCATGGTGCTCCACCCTTCTCTTTATTGCATGAATAG 2046 0.414 MGSMNLLGFSLSPQEHPSSQDHSQTAPSRFGFNSDGISSTDVAGECFDLTSDSTPHLLNLPSYGIYEAFHRNNNIHTTQDWKENYNSQNLLLGTSCNNQNMNHNQQQQQQQPKLENFLGGHSFGDHEHQTYGGNSATTDYMFPAQPVAASGGGSSGGGGSSANNSNSIGLSMIKTWLRNQPPHSENNNESGGNSKSSVQTLSLSMSTGSQSSSSLPLLTAGVDGESSSDNKQPLTTVALDTTQTGVIETAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELGVDGHRDQEDHSIMNSHITQGISNNYGGATTYHNWHNALAFHQPQPYTTIHYPYGQRQWCKQEQQDTSDASHPLSYPDVHQLQLGNNSTHNFFHSNSGLHPMMSMDSASIDNSSSSNSVVYDGYGGGGGGGYVIPMGTTTTVVASDGDQSQRSNNGFGENEMKALGYESVYGSNDAYHAHARNLYYLSQQQPSSVDAVKASAYDQGSSCNTWVPTAIPTLAPRSTSMALCHGAPPFSLLHE 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02024 681 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700|GO:0006355
Cca07g02024 681 PRINTS Ethylene responsive element binding protein signature 390 410 IPR001471 GO:0003700|GO:0006355
Cca07g02024 681 SUPERFAMILY DNA-binding domain 362 410 IPR016177 GO:0003677
Cca07g02024 681 MobiDBLite consensus disorder prediction 154 233 - -
Cca07g02024 681 MobiDBLite consensus disorder prediction 116 233 - -
Cca07g02024 681 ProSiteProfiles AP2/ERF domain profile. 264 327 IPR001471 GO:0003700|GO:0006355
Cca07g02024 681 PANTHER BNAC02G44180D PROTEIN 5 572 - -
Cca07g02024 681 Gene3D AP2/ERF domain 338 410 IPR036955 GO:0003700|GO:0006355
Cca07g02024 681 Gene3D AP2/ERF domain 264 329 IPR036955 GO:0003700|GO:0006355
Cca07g02024 681 ProSiteProfiles AP2/ERF domain profile. 345 408 IPR001471 GO:0003700|GO:0006355
Cca07g02024 681 SUPERFAMILY DNA-binding domain 263 329 IPR016177 GO:0003677
Cca07g02024 681 CDD AP2 362 410 IPR001471 GO:0003700|GO:0006355
Cca07g02024 681 SMART rav1_2 363 414 IPR001471 GO:0003700|GO:0006355
Cca07g02024 681 SMART rav1_2 264 333 IPR001471 GO:0003700|GO:0006355
Cca07g02024 681 Pfam AP2 domain 264 319 IPR001471 GO:0003700|GO:0006355
Cca07g02024 681 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 572 - -
Cca07g02024 681 MobiDBLite consensus disorder prediction 1 34 - -
Cca07g02024 681 CDD AP2 263 329 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02024 Cca-Chr7 47760521 47764872 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02024 112 435 AP2-EREBP Transcription Factor Family AT5G17430 60.000 4.93e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g02024 AP2 3.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02024 K09285 - gmx:100797584 1089.72