Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02018 ATGTTTACCGAATGGAAGAAGATAAGGGTTCTGGGAGAAGGTTCCTTTGGAACTGTCTCTCTTGCTACGACCATTTTTCCAAAAGAAGTGCAAGAAGTGTTGATAGCTGTTAAGAGTTCAAAGCCTCACAGGGAAGAATCTTTGGAGAAAGAAGAAGCCATATTGAATTTATTCCATGGTCGCAAAGAAATTGTTCAGTGCATTGGGGGCGTACCCTCCATAGAGAATAGTGGTTATGTCTACAATCTGATGATGGAGTTTGCTCCTTATGGCTCTCTTGGAAACTTGATCAAAAGGAGAAAATCACTATTGGAGAGTGAAGTAAAAGTGTACACACGCATGCTTCTGAAAGGGCTTTCTGTGATTCATGAATTTGGAGTCATTCATTGTGATCTTAAACCGGACAACGTTCTTTTATTTCCTTCCCAAGAACATGGTGTGGAGTATGAACTAAAGATTGGTGATTTTGGAATGTCTAAGAGGAAAGAAGAGGTGTTTGATGGTGACTTTTGGAAGATTAAGTTTAGAGGTTCACCATATTACATGTCACCAGAATCAGTGAGGGGGCAAATCGAAGCAGCCTTGGATATATGGTCTCTTGGATGCATGGTTATTGAAATGCTCACTGGTTTACCTGCATGGCACAAAGTTCCCACCTTACGTGACTTAATGTTTAAACTTGCGGTTCTTAAGGAAGCACCACCAATACCTTCCGATTTCACTCCTCTTTGTCAAGATTTCTTGAATAAGTGCTTTCTCAAGAACCCTTCTCAGAGGTCCACTGCCAACATGCTTCTTAATCATCCTTTTCTTTCTATTACGGATAAAATTTTTTTGGAAAATGAAAATTTTGTTGAATCCAAATTCATCAAGACAAGGCATGTTGGTCTCGAATTGGATAATAATTCTCCAGAAATTACACGTGAAAATGGCATAATTCAAGTGAACAAGTTTGGGTTTGTGTTGTTTTGTTTGCTGCTAATACAAGTTTCAGTTTCTGAAATCATTTTCGAAGAGCGCTTTGACGATGGATGGCGAGGTCGGTGGGTAAAATCAGACTGGAAAAGCAGTGAGGGCAAAGCAGGTTCATTCAAGCACACAGCTGGAAAATGGGCTGGTGATCCAGATGATAAAGGTATTCAAACATCTAGCGATGCCAAACATTCTGCCATCTCTGCAAAAATACCAGAATTCAGCAACAAGAACAGAACATTGGTCCTCCAGTATTCTGTAAAATTTGAGCAAGAAATTGAGTGTGGTGGAGGTTACATCAAGCTCCTCTCCGGATTTGTTAATCAAAAGAAGTTTGGTGGGGATACGCCTTATATTTTGATGTTTGGACCAGATTTGTGTGGTACTGATACAAAGAAGCTCCATGTGATACTCTCCTACCACGGTCAAAATTACCCCATAAAGAAGGACCTGCAATGTGAAACTGACAAGTTAACTCATTTCTACACATTCATTCTTCGGCCAGATGCCTCATACAGTGTGCTGGTTGACAATAGAGAGAGAGATTCCGGAAGCATGTATACAGATTGGGATATTCTTCCTCCACGAAAAATCAAAGATGTCAAGGCCAAAAAGCCTGCAGACTGGGAGGAAAGAGAATACATTGAAGACCCTAATGATGTCAAACCTGAGGGATATGATTCGATCCCAAGAGAAATTCCTGACCCAAATGCTAAAGAGCCTGATAACTGGGATGAAGAGGAAGACGGGAAATGGAAACCACCAAAGATACCAAATCCAGCATACAAAGGACCATGGAAAAGAAAGAAAATCAAGAACCCTAACTACAAAGGAAAATGGAAAACTCCATGGATAGATAATCCAGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCTATCAAGTATGTGGGCATTGAAGTTTGGCAGGTATGGTAA 1914 0.4039 MFTEWKKIRVLGEGSFGTVSLATTIFPKEVQEVLIAVKSSKPHREESLEKEEAILNLFHGRKEIVQCIGGVPSIENSGYVYNLMMEFAPYGSLGNLIKRRKSLLESEVKVYTRMLLKGLSVIHEFGVIHCDLKPDNVLLFPSQEHGVEYELKIGDFGMSKRKEEVFDGDFWKIKFRGSPYYMSPESVRGQIEAALDIWSLGCMVIEMLTGLPAWHKVPTLRDLMFKLAVLKEAPPIPSDFTPLCQDFLNKCFLKNPSQRSTANMLLNHPFLSITDKIFLENENFVESKFIKTRHVGLELDNNSPEITRENGIIQVNKFGFVLFCLLLIQVSVSEIIFEERFDDGWRGRWVKSDWKSSEGKAGSFKHTAGKWAGDPDDKGIQTSSDAKHSAISAKIPEFSNKNRTLVLQYSVKFEQEIECGGGYIKLLSGFVNQKKFGGDTPYILMFGPDLCGTDTKKLHVILSYHGQNYPIKKDLQCETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWEEREYIEDPNDVKPEGYDSIPREIPDPNAKEPDNWDEEEDGKWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVW 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02018 637 CDD STKc_MAPKKK 4 271 - -
Cca07g02018 637 Gene3D Calreticulin/calnexin, P domain 519 620 IPR009033 GO:0005509|GO:0005515
Cca07g02018 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cca07g02018 637 ProSitePatterns Calreticulin family signature 2. 444 452 IPR018124 GO:0005509
Cca07g02018 637 SUPERFAMILY Concanavalin A-like lectins/glucanases 328 532 IPR013320 -
Cca07g02018 637 PANTHER OS01G0895600 PROTEIN 319 636 - -
Cca07g02018 637 SMART serkin_6 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02018 637 ProSitePatterns Protein kinases ATP-binding region signature. 11 38 IPR017441 GO:0005524
Cca07g02018 637 SUPERFAMILY Protein kinase-like (PK-like) 4 275 IPR011009 -
Cca07g02018 637 Gene3D - 334 637 - -
Cca07g02018 637 ProSitePatterns Calreticulin family signature 1. 412 427 IPR018124 GO:0005509
Cca07g02018 637 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02018 637 PRINTS Calreticulin signature 440 456 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 PRINTS Calreticulin signature 414 432 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 PRINTS Calreticulin signature 595 614 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 PRINTS Calreticulin signature 529 542 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 PRINTS Calreticulin signature 628 637 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 PRINTS Calreticulin signature 557 579 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 Pfam Calreticulin family 574 635 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 Pfam Calreticulin family 338 572 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 ProSiteProfiles Protein kinase domain profile. 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02018 637 SUPERFAMILY P-domain of calnexin/calreticulin 515 630 IPR009033 GO:0005509|GO:0005515
Cca07g02018 637 PANTHER CALRETICULIN AND CALNEXIN 319 636 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Cca07g02018 637 MobiDBLite consensus disorder prediction 533 592 - -
Cca07g02018 637 MobiDBLite consensus disorder prediction 533 578 - -
Cca07g02018 637 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02018 Cca-Chr7 47681587 47696660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02018 4 282 MAP Kinase Kinase Kinase AT4G36950 40.411 1.08e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca07g02018 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02018 K08057 - gmx:100801827 671.389