Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02007 ATGGAAAATCACCGTTTGCTACTTTATTGCATGCTTTTGTTGAGTCATTGGATCTCTGTTCAAGCTGCCCCTGCACAATCCCTCGTCACACAACTCCCTGGCTTTTCCTCCACTTTTCCATCCAAACACTACTCTGGATACATAAGTATTGATGGAAATGGTGAGAGTGGGAAGAACCTGTTCTACTACTTCGTTAGTTCAGAAAGAAGTCCAGAAAAGGACCCAGTTGTTTTATGGCTGAATGGTGGACCTGGCTGCTCCAGCTTCGATGGCTTCGTTTATGAACATGGACCATTCAACTTTGAGGCTGCGAAATCAAAGGGGAATCTACCCACTTTGCATATCAATCCTTACAGCTGGTCCAAGGTTTCCAACATGATATACTTGGATTCTCCAGCGGGTGTTGGACTCTCTTACTCCAAGAACACAAGCAAATACGCAACTGGGGATCTACAAACTGCGACTGATACCCATCTTTTCCTCTCAAAGTGGTTTGAGCAATTTCCGGAATTTCTGGCTAATCCATTTTATATTGCTGGGGAGTCTTATGCCGGAGTTTATGTGCCCACTCTAGCTTTGGAAGTTGTTAAAGGAATCCGGAGTGGTTCAAAGCCCGTGATCAATTTTAAGGGTTACATGGTTGGAAATGGTGTGACGGACGAAATAATTGACGGCAACGCTCTTATCCCATTTGTGCACGGGATGGGTCTCATATCCGACAGTATCTACGAGGATTTACAAGCTTCTTGTAAAGGAAGCTACTACAATGCTTACTCAATGGACGAAAATGATTTGTGTTTTAAAAACATGGAAAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAACATACTAGAGCCATGTTACCATTTCCCTGATGCTGCCACTGCCACAGTAAATGGAAGCTCATTACCACATAGTTTTCAGCAATTAGGGGCTACTGAGAGGCCTCTTCCAGTGAGGACAAGAATGTTTGGAAGAGCTTGGCCTTTTCGAGCACCAGTCAAAGCTGGCCCTGTTACATTATGGCCACAATTGGCTGAAACAAGACATGTCGCATGTGTCAGTGATGAAGTAGCAAGTGCATGGCTAAACAATGTTGAAGTCAGGAAAGCTATCCATGCTGAGTCGGAAAAAGTGGCGGGTCCGTGGGAATTATGTACTAGTAGAATAGAGTATCGTCACAATGCTGGAAGCATGATTCCTTACCACAAGAAGCTAACCTTGTTGGGCTATAAGGCACTTATTTTCAGTGGAGATCATGATATGTGCGTGCCATTTACGGGAAGTGAGGCTTGGACACGATCTCTAGGATATAAAATTGTGGATGAATGGAGGCCATGGAACTCAGATAATCAAGTTGCAGGGTACTTACAAGCGTACCAGAACAACCTCACCTTCCTCACAATCAAGGGAGCTGGGCACACGGTACCGGAATATAAGCCGCGTGAAGCGTTGGATTTTTACAGTCGTTGGTTGGAAGGAAAGGCGATATAA 1500 0.4453 MENHRLLLYCMLLLSHWISVQAAPAQSLVTQLPGFSSTFPSKHYSGYISIDGNGESGKNLFYYFVSSERSPEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKSKGNLPTLHINPYSWSKVSNMIYLDSPAGVGLSYSKNTSKYATGDLQTATDTHLFLSKWFEQFPEFLANPFYIAGESYAGVYVPTLALEVVKGIRSGSKPVINFKGYMVGNGVTDEIIDGNALIPFVHGMGLISDSIYEDLQASCKGSYYNAYSMDENDLCFKNMEKVDRAIDGLNVYNILEPCYHFPDAATATVNGSSLPHSFQQLGATERPLPVRTRMFGRAWPFRAPVKAGPVTLWPQLAETRHVACVSDEVASAWLNNVEVRKAIHAESEKVAGPWELCTSRIEYRHNAGSMIPYHKKLTLLGYKALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWNSDNQVAGYLQAYQNNLTFLTIKGAGHTVPEYKPREALDFYSRWLEGKAI 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02007 499 Gene3D - 401 496 - -
Cca07g02007 499 Gene3D - 355 393 - -
Cca07g02007 499 ProSitePatterns Serine carboxypeptidases, histidine active site. 466 483 IPR033124 GO:0004185
Cca07g02007 499 PANTHER CARBOXYPEPTIDASE 13 498 - -
Cca07g02007 499 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Cca07g02007 499 Gene3D alpha/beta hydrolase 21 316 IPR029058 -
Cca07g02007 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Cca07g02007 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Cca07g02007 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Cca07g02007 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 466 479 IPR001563 GO:0004185|GO:0006508
Cca07g02007 499 SUPERFAMILY alpha/beta-Hydrolases 29 497 IPR029058 -
Cca07g02007 499 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 498 IPR001563 GO:0004185|GO:0006508
Cca07g02007 499 Pfam Serine carboxypeptidase 33 496 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02007 Cca-Chr7 47582004 47586979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02007 360 499 Calmodulin-binding Proteins AT2G22960 47.143 8.13e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02007 K16296 - gmx:100790895 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02007 07 47582004 47586979 Cca01g02347 01 52056444 52058319 PCT