Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01990 ATGCATAAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATTTTTTAGGCTATCCACTCCGCCCAAATGAGCCTGAATGTGCCTATTATTTAAGAACTGGACAATGTAAATTTGGTAACACATGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCATGCGAAGTTCTCCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCATATGCGACAGGAATTACAAATTGGTCTAGTTCATCGTATATTCCTAGCCCACGTTGGCAAGGCCCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTGGGTGGAGTGCGTACAGTGGCCAAATGGGACCAGAAAGTCCACAACAAACAATGGGAAATGGCCAAAGCTATGGAACTTCTCGGCAAAGTGAACCAGCTACTGCAGGATCCCAGGGGGCATATTCTCAATTTCGATCTGGCTCTGTTCCTGTAGGGTTCTATGCATTGCAGAGGGAGAGCATATTTCCTGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCGGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCCATTGGCCTTCCTTTACGTCCTGGAGAGCCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGGCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGTCGGCGATTGTTAGGTTCTTCATCAGGAAGTGCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACCAGACAGATTCCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1020 0.45 MHKYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNFLGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSAYSGQMGPESPQQTMGNGQSYGTSRQSEPATAGSQGAYSQFRSGSVPVGFYALQRESIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPSADAPGRRLLGSSSGSAALNLSSEGLVESGSAKPRRLSLSETRQIPSGDDNIDEEG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01990 339 SUPERFAMILY CCCH zinc finger 248 272 IPR036855 GO:0046872
Cca07g01990 339 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 3 338 - -
Cca07g01990 339 SUPERFAMILY CCCH zinc finger 202 228 IPR036855 GO:0046872
Cca07g01990 339 SUPERFAMILY CCCH zinc finger 45 70 IPR036855 GO:0046872
Cca07g01990 339 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Cca07g01990 339 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Cca07g01990 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 272 IPR000571 GO:0046872
Cca07g01990 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 23 IPR000571 GO:0046872
Cca07g01990 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 69 IPR000571 GO:0046872
Cca07g01990 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 201 226 IPR000571 GO:0046872
Cca07g01990 339 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Cca07g01990 339 MobiDBLite consensus disorder prediction 142 175 - -
Cca07g01990 339 Gene3D - 191 274 - -
Cca07g01990 339 Gene3D - 2 80 - -
Cca07g01990 339 MobiDBLite consensus disorder prediction 140 175 - -
Cca07g01990 339 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Cca07g01990 339 SMART c3hfinal6 1 23 IPR000571 GO:0046872
Cca07g01990 339 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Cca07g01990 339 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Cca07g01990 339 PANTHER PROTEIN PHOSPHATASE RELATED 3 338 - -
Cca07g01990 339 MobiDBLite consensus disorder prediction 308 339 - -
Cca07g01990 339 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01990 Cca-Chr7 47393677 47402775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01990 39 76 C2H2 Transcription Factor Family AT3G02830 55.263 5.94e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca07g01990 zf-CCCH 3.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01990 - - gmx:100786261 676.396