Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01983 ATGGTTTCCCTTTCCACCACCCTTTTCCTTTCCCTCACTGCACAAAACGCTTCCTCTAGAATCCCCCCTCCCAATTCCTTCCGTTACAACAACCACCGTAACAGGGATCACAGGAAGGTTGTCTGTGCCTGCATCGCACCCCCGCAAAACTTCAAGAGCCAGGACTCTTCCCCCATTAATTTCAATGGTTTGTCTAAATCAGAACAGTTGAGCACGGCGCGGGATCATGAGGATGATTCTGATGTTCTGATTGAGTGTAGAGATGTGTACAAGTCTTTTGGGGAGAAGAAAATTTTAAATGGTTTAAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGTAAATCTACAGTTTTGAAGATTATGGCAGGACTTCTTGCTCCGGACAAGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGATGACATATCTGGTCTTCGAATTGGATTAGTTTTCCAAAGTGCAGCACTTTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAACCATGTCTGATGACCAGATATCAGAGCTTGTCAAGGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTTGAGGAGCGGTTGCCCTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTGTGACACCACAAAAGAATCAATAGAGCCAGAGGTGCTCTTGTATGATGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCGGTGCACATTAAAGGACAAGACGCACGTGGGAAACCTGGGAATATTACATCTTATGTGGTTGTTACTCATCAACATAGTACCATTAAAAGAGCCATTGATAGGTAA 915 0.4372 MVSLSTTLFLSLTAQNASSRIPPPNSFRYNNHRNRDHRKVVCACIAPPQNFKSQDSSPINFNGLSKSEQLSTARDHEDDSDVLIECRDVYKSFGEKKILNGLSFKIRHGEAVGIIGPSGTGKSTVLKIMAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSTMSDDQISELVKETLAAVGLKGVEERLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDARGKPGNITSYVVVTHQHSTIKRAIDR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01983 304 Gene3D - 70 304 IPR027417 -
Cca07g01983 304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 84 304 IPR003439 GO:0005524
Cca07g01983 304 ProSitePatterns ABC transporters family signature. 219 233 IPR017871 GO:0005524
Cca07g01983 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 304 IPR027417 -
Cca07g01983 304 SMART AAA_5 108 292 IPR003593 -
Cca07g01983 304 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 25 304 - -
Cca07g01983 304 Pfam ABC transporter 99 254 IPR003439 GO:0005524
Cca07g01983 304 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 25 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01983 Cca-Chr7 47322274 47327358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01983 90 301 Calmodulin-binding Proteins AT2G36910 29.694 3.37e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01983 - - gmx:100783283 541.191