Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01982 ATGTTCAAATTCCTGAAGGAGGTCGTCGGCGGATCTGGCACCGGCATCAAGGATCTCCCTTACACCGTCGCCGAACCTTACCCTTCCGCGTGGGGCTCATGGACTCATTCTCGCGGCACCTCCAAGGATGACGGTTCTCCCGTCTCCGTTTTCTCTCTCTCCGGCTCCAACGCTCAGGACGGTCACCTCGCCGCCGCGCGCAACGGCGTCAAGCGCCTCCGAACTGTGAGGCATCCGAACATCTTGTCGTTTCTTCACAGCGCGGAGATCGAGACTCACGATGCAGGCTCTCCTAAGGTCACGATATACATTGTGACGGAGCCGGTGATGCCGCTGTCTGAGAAGATCAAGGAGTTAGGGCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTGTTCATGGTAATGTTTGCTTGGCTAGTGTTGTTGTAACACCAACTTTGGATTGGAAGCTTCATGCTTTTGATGTTCTATCAGAGTTCGATGGGGGCAATGAAACGTCTTCTGGCCAAATGCTGcaatatgcatggcttgttggatcacaatacaaaccgatggagttggcgaaatcagactgggatgcagttaagaagtctcctccatgggcaattgattcttggggcatggGCTGCTTAATCTATGAGGTATTCTCTGGTCTGCGGTTGGGCAAAACAGAGGAGTTACGCAACACTGGTTCCATTCCCAAGTCTCTGCTTCCAGATTACCAACGATTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAGTATTTTCAAAATAAGTTAGTAGACACAATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTGGAGAAAGACACATTCTTTCGCAAGCTTCCAAATTTAGCCGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTAGTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTACCGCCGCAGCTTTGACTGCATTGTTGAAAATGGGTTCATGGCTTTCAGCTGAGGAGTTTAATGTCAAGGTGCTTCCAACAATTGTAAAACTCTTTGCCTCCAATGATCGAGCTATTCGAGTTGGCCTTCTTCAACATATTGATCAATATGGGGAGTCTTTATCAGCACAAGTTGTTGATGAGCAAGTTTACCCGCATGTTGCTACTGGGTTCTCTGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGTTGTCTCAAAGAACCATGTCAGGGTCGTTATTGAAATATCTGTCAAAGTTGCAGGTTGATGAAGAACCAGCAATTAGAACAAATACTACCATATTATTAGGCAATATTGGAAGTTACTTAAACGAAGGAACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGAGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATAATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGATAGTGATGTTAGAACTAAGGCGTTTCAAGCTGTTGATCAGTTTTTGCAGATAGCAAAGCAACATTATGAGAAGACAAATGCAGCAGATAGCACTGGCGGTGCAAGTTTGGGAAGCTCATCTGTTCCAGGAAATGCTAGTTTGCTTGGATGGGCTATGAGCTCCTTGACCTTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGCGAGTTCAACTGCAATCACATCAACATCTTCTAATGGCACCACAGATATAGAGATGCCATCAACAGCGCCAGCCCGCGTAAGCTCTACAACAGATTTGGCCGAACACCCTGTCCCTACATCTCCTACATCAACCGATGGCTGGGGTGAACTTGAGAATGGAAGTAATGAGGAGCATGAAGGTGACAGGGATGGGTGGGATGAACTAGAACCACTTGAAGAGATAAAGCCAACTCCAGCTCTTGCAAACATTCAAGCAGCCCAAAGGCGGCCTGTTTCTCAACCTATTTCACAGGCAAAACAAGCCTCAAATTTGCGCTCCAAAAGTACACCAAAATTGAACAAGGATGAGGATGAGGATTTGTGGGGGTCTATAGCAGCTCCTGCACCAAAAACTTCAAAACCTTTAAATTTGAAAGCATCTAGAAGTGAAGATGATGATCCTTGGGCCGCCATTGCTGCTCCTGCACCCATTACCAAGGCCAAGCCCTTATCGGCTGGAAGAGGTAGGGGAACCAAACCTGCTGCTCCAAAATTAGGTGCTCAGCGGATAAACCGGACATCATCAGGCATGTAA 2388 0.4347 MFKFLKEVVGGSGTGIKDLPYTVAEPYPSAWGSWTHSRGTSKDDGSPVSVFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETHDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTPTLDWKLHAFDVLSEFDGGNETSSGQMLQYAWLVGSQYKPMELAKSDWDAVKKSPPWAIDSWGMGCLIYEVFSGLRLGKTEELRNTGSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLVPLLASALEFGSATAAALTALLKMGSWLSAEEFNVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTMSGSLLKYLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDQFLQIAKQHYEKTNAADSTGGASLGSSSVPGNASLLGWAMSSLTLKGKPSDHAPVASASSTAITSTSSNGTTDIEMPSTAPARVSSTTDLAEHPVPTSPTSTDGWGELENGSNEEHEGDRDGWDELEPLEEIKPTPALANIQAAQRRPVSQPISQAKQASNLRSKSTPKLNKDEDEDLWGSIAAPAPKTSKPLNLKASRSEDDDPWAAIAAPAPITKAKPLSAGRGRGTKPAAPKLGAQRINRTSSGM 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01982 795 ProSiteProfiles HEAT repeat profile. 523 561 IPR021133 -
Cca07g01982 795 PANTHER - 1 793 - -
Cca07g01982 795 SUPERFAMILY Protein kinase-like (PK-like) 38 287 IPR011009 -
Cca07g01982 795 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Cca07g01982 795 MobiDBLite consensus disorder prediction 601 655 - -
Cca07g01982 795 MobiDBLite consensus disorder prediction 689 795 - -
Cca07g01982 795 Gene3D Transferase(Phosphotransferase) domain 1 110 281 - -
Cca07g01982 795 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01982 795 MobiDBLite consensus disorder prediction 691 713 - -
Cca07g01982 795 Gene3D - 282 561 IPR011989 -
Cca07g01982 795 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 1 793 - -
Cca07g01982 795 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Cca07g01982 795 MobiDBLite consensus disorder prediction 594 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01982 Cca-Chr7 47304497 47315184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01982 70 291 MAP Kinase Kinase Kinase AT5G66850 24.576 4.80e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Cca07g01982 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01982 K08876 - gmx:100789813 1442.56