Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01969 ATGGAGCTTCACAACCTCAATATTCTCAGCATAATATTGCTCCTATATTTGTTCCCTCACCCACTCAAGTGCCAACAAGTATACCTCAACGACACTGTCTATGAATGCTCTATCAACCCTTCTGTACCAAAAGGATATCTTTGCAATGGCCATCAAAAGTCATGCACTTCCTTCTTAATTTTCAGGTCCAACTCTCCATATGACAACGCTGAGAGCATTGCTTACCTTCTTGGCTCTGAAGCATCTAATATAGCCTCAATCAACAATATCTCAAGCAATGAAAAGATTGCTTCCAACAAGTCAATCATTGTTCCTGTCTTCTGTTCATGTTCTGGAAACATCTACCAGCATAAAACACATTACACAGTCAAAAAGAATGACATCTACTGGGCGTTGGTAAAAGAAACCTTCCAAGGCCTCACCACCTGCCAGGCAATAATGGGTCAGAATTACTATGCCCCTGTCAAGATTGCAATTGGTGCTGATCTCACAGTTCCTATATTGTGTGCTTGTCCCACTGAAAATCAGACAGCAAGAGGTTTCACCTCTTTGCTAGTTTACTTGGTGAACTCTGGTGACACCATTAAGTCCATAGGAGAGGCTTATGGTGTGGATGAACAAAGTATACTAGAGGCCAATGAGTTGTCAGCTCTACGAAGTAAAAACAGTAGCGTGGACCTCCTTGCCTTGACACCTATTTTAGTTCCTCTAATAGGGAAGAGCTGCAAAGAGAACCCAGATAGATTCTATTGTAAATGTTACCAAGAACCAGATGGAAGCTCCCAGGGGATCTTCTGTGATGAATCTGATGGTCGGGATTTCCCTGCAAAAGTGGTTGCTGCTTTAGGTGTTGGACTTGGTGTATCCTTTCTGTGTTTGTTTCTTTTGGGGTACAAGTTATATCAATGCATACAGAAAAGGAGAGAAAGTATCCGTAAGGAAAAGCTATTCAGGCAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCATATTATGGAAACGGAGAAATGGCAAAGCTTTTTACAGCTGAGGAGCTACGAAGAGCAACAGATAACTACAACAGGAGCAGGTTTCTTGGTCAGGGAGGCTATGGCAAGGTGTATAAAGGAATGTTACCTGATGGAACCATAGTTGCAGTTAAAAAGTCCAAAGAGATTGAAAGGAACCAGATAGAGACTTTTGTCAATGAAGTGGTCATTCTTTCTCAGATCAACCATAGGAACATTGTCAAACTCTTTGGTTGTTGTCTTGAGACAGAATCTCCCTTACTAGTCTATGAATTCATTCCCTATGGAACACTTTCTCATCATATCCATAGGAGAGACAATGAACCATCCCTTGCTTGGGAAATTCGCCTTAGAATTGCGTGTGAGGTTGCTGGCGCAGTAGCATATATGCATTTTTCAGCCTCTATTCCCATTTtccatagagacatcaaacccaccaacatacttttagacagtaactacagtgccaaagtgtctgattttggaacatcaagatcagtgccagtagataagactcacttgaccacagctgttggaggaacttttgggtacatagaccctgaatattttcagtctagtcaattttcagataaaagtgatgtgtatagttttggggttgtgcttgtggagCTCATAACTGGGAGAAAGCCTGTTTCATTCTTGAATGAAGATGAGGGTCAGAATCTAATTGCACAGTTCATTTCTTTGATGAAGGTGGACCAAGTTTCTGAAATTTTAGATGCCAGGATTCTCAAGGAAGCAAGGAAAGATGATATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGGCCAGCTATGAAAGAGGTTTCAGCAGAATTAGAAGCATTGAGAAGTGTTCAAAGCTCCTCCCAGATCAACCATGATCATGAGCACACCACTAGTGATACAGTTCATGAATTCACAGAGGAAACCACGTCATTTTCCTTACGACTAGAGTCCACATCCTTCTAG 2001 0.3703 MELHNLNILSIILLLYLFPHPLKCQQVYLNDTVYECSINPSVPKGYLCNGHQKSCTSFLIFRSNSPYDNAESIAYLLGSEASNIASINNISSNEKIASNKSIIVPVFCSCSGNIYQHKTHYTVKKNDIYWALVKETFQGLTTCQAIMGQNYYAPVKIAIGADLTVPILCACPTENQTARGFTSLLVYLVNSGDTIKSIGEAYGVDEQSILEANELSALRSKNSSVDLLALTPILVPLIGKSCKENPDRFYCKCYQEPDGSSQGIFCDESDGRDFPAKVVAALGVGLGVSFLCLFLLGYKLYQCIQKRRESIRKEKLFRQNGGYLLQEKLSYYGNGEMAKLFTAEELRRATDNYNRSRFLGQGGYGKVYKGMLPDGTIVAVKKSKEIERNQIETFVNEVVILSQINHRNIVKLFGCCLETESPLLVYEFIPYGTLSHHIHRRDNEPSLAWEIRLRIACEVAGAVAYMHFSASIPIFHRDIKPTNILLDSNYSAKVSDFGTSRSVPVDKTHLTTAVGGTFGYIDPEYFQSSQFSDKSDVYSFGVVLVELITGRKPVSFLNEDEGQNLIAQFISLMKVDQVSEILDARILKEARKDDILAIANLAMRCLRLNGKKRPAMKEVSAELEALRSVQSSSQINHDHEHTTSDTVHEFTEETTSFSLRLESTSF 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01969 666 PANTHER LYSM TYPE RECEPTOR KINASE 26 649 - -
Cca07g01969 666 Pfam Protein kinase domain 353 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01969 666 ProSiteProfiles LysM domain profile. 185 235 IPR018392 -
Cca07g01969 666 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 649 IPR045274 GO:0007166
Cca07g01969 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Cca07g01969 666 CDD STKc_IRAK 359 626 - -
Cca07g01969 666 ProSiteProfiles Protein kinase domain profile. 353 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01969 666 Gene3D Phosphorylase Kinase; domain 1 327 428 - -
Cca07g01969 666 Gene3D Transferase(Phosphotransferase) domain 1 429 652 - -
Cca07g01969 666 MobiDBLite consensus disorder prediction 630 649 - -
Cca07g01969 666 SUPERFAMILY Protein kinase-like (PK-like) 336 623 IPR011009 -
Cca07g01969 666 Pfam LysM domain 187 216 IPR018392 -
Cca07g01969 666 SMART serkin_6 353 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01969 666 ProSitePatterns Protein kinases ATP-binding region signature. 359 382 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01969 Cca-Chr7 47179696 47182593 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01969 283 636 Receptor kinase-like Gene Family AT1G16130 57.865 1.45e-140 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca07g01969 Pkinase 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01969 - - gmx:100792803 1088.56