Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01968 ATGGCAAAGAGCGGTGTCCGCAAGTGTCGTTGGGGTAAATGGGACTCCAAAATTCGGGAGCTAGAGAAGAAGTCGCGGATATGGTTGGGGTCGTTTCTGGTGCCGGAGATGGCAACGCGAGCCTACGACGTGGCGGCCTTCTGCCTTAAGGGTTGGAAGGCGCAACTCAACTTTCCCGACGAGGTTGAGGCCCTGCTGCTTCCGCTGACGCGCACGCCCACGGACATCCAAGTGACGGCGGCCAAGGCGGCGCGCACCATCAAAGCCTCACGCGACAAGAAGGGCGGCATTGCCTCCGACGACAATTTTTGGGGCCATATTGAGTTACTGGAGGGGGCTGCTGTCGAACGTGGCGGTGGCGCACATGCGGTTTTTGTTCCCAATTCGGAACCACTCCCACCAACCCTAAACTCCTCCACGCCGCCTTTTGTCGCGAAGCGAAAATCGCCCTCCATGTTCATGATCTCGTGGTTCCCGTTCATCGTGATGATTGCACCGCTGCATCGCGCTTCAGGCTTCTCTACGAAGTAG 531 0.5819 MAKSGVRKCRWGKWDSKIRELEKKSRIWLGSFLVPEMATRAYDVAAFCLKGWKAQLNFPDEVEALLLPLTRTPTDIQVTAAKAARTIKASRDKKGGIASDDNFWGHIELLEGAAVERGGGAHAVFVPNSEPLPPTLNSSTPPFVAKRKSPSMFMISWFPFIVMIAPLHRASGFSTK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01968 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 101 - -
Cca07g01968 176 ProSiteProfiles AP2/ERF domain profile. 2 59 IPR001471 GO:0003700|GO:0006355
Cca07g01968 176 Pfam AP2 domain 4 51 IPR001471 GO:0003700|GO:0006355
Cca07g01968 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 5 101 - -
Cca07g01968 176 SMART rav1_2 5 65 IPR001471 GO:0003700|GO:0006355
Cca07g01968 176 Gene3D AP2/ERF domain 4 60 IPR036955 GO:0003700|GO:0006355
Cca07g01968 176 CDD AP2 5 60 IPR001471 GO:0003700|GO:0006355
Cca07g01968 176 PRINTS Ethylene responsive element binding protein signature 3 14 IPR001471 GO:0003700|GO:0006355
Cca07g01968 176 PRINTS Ethylene responsive element binding protein signature 41 61 IPR001471 GO:0003700|GO:0006355
Cca07g01968 176 SUPERFAMILY DNA-binding domain 5 61 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01968 Cca-Chr7 47175782 47176312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01968 5 120 AP2-EREBP Transcription Factor Family AT1G01250 64.706 2.39e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g01968 AP2 5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01968 K09286 - gmx:100819971 147.902